RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 WFDC5Q8TCV5 224 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 DHRS7CA6NNS2 312 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 ALG1L2C9J202 215 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 LGALSLQ3ZCW2 172 aaPredicted RBP12.32□□□□□ -0.44
CSPG4-201ENST00000308508 FAM209BQ5JX69 171 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 COPS9Q8WXC6 57 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 AKIRIN1Q9H9L7 192 aaPredicted RBP12.32□□□□□ -0.44
CSPG4-201ENST00000308508 TMEM265A0A087WTH1 108 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 AESQ08117 197 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 INSL4Q14641 139 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 CXorf67Q86X51 503 aaPredicted RBP12.32□□□□□ -0.44
CSPG4-201ENST00000308508 OR4B1Q8NGF8 309 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 OR5R1Q8NH85 324 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 OPN4Q9UHM6 478 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 FAM157CP0CG43 387 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 BTF3P20290 206 aaKnown RBP12.32□□□□□ -0.44
CSPG4-201ENST00000308508 TAS2R60P59551 318 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 CNRIP1Q96F85 164 aaPredicted RBP12.32□□□□□ -0.44
CSPG4-201ENST00000308508 CEACAM3P40198 252 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 TMEM65Q6PI78 240 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 EID2BQ96D98 161 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 MARCH5Q9NX47 278 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 LOC107984156A0A0G2JMH3 177 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 LMX1BO60663 402 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 STAG3L3P0CL85 134 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 PMCHL1Q16048 86 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 TRILQ7L0X0 811 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 ARL17AQ8IVW1 177 aa12.32□□□□□ -0.44
CSPG4-201ENST00000308508 hADV38S2A0JD32 116 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 CD1BP29016 333 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 CHST1O43916 411 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 RELBQ01201 579 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 SSX8Q7RTT4 187 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 SFTPA2Q8IWL1 248 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 SFTPA1Q8IWL2 248 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 SNRNP40Q96DI7 357 aaKnown RBP12.31□□□□□ -0.44
CSPG4-201ENST00000308508 SARGQ9BW04 601 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 UQCR10Q9UDW1 63 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 TBX21Q9UL17 535 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 VDAC1P21796 283 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 LDLRAD1Q5T700 205 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 C16orf82Q7Z2V1 217 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 ZNF683Q8IZ20 524 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 RBM38Q9H0Z9 239 aaKnown RBP12.31□□□□□ -0.44
CSPG4-201ENST00000308508 ZBP1Q9H171 429 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 CXCL3P19876 107 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 KIR2DL1P43626 348 aaPredicted RBP12.31□□□□□ -0.44
CSPG4-201ENST00000308508 KIR2DL2P43627 348 aaPredicted RBP12.31□□□□□ -0.44
CSPG4-201ENST00000308508 LGALS7P47929 136 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 METAP1P53582 386 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 ZNF770Q6IQ21 691 aaPredicted RBP12.31□□□□□ -0.44
CSPG4-201ENST00000308508 TOX2Q96NM4 488 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 NTMQ9P121 344 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 CKAP5Q14008 2032 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 A0A1B0GV72 72 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 COMPP49747 757 aaPredicted RBP12.31□□□□□ -0.44
CSPG4-201ENST00000308508 TPRP12270 2363 aaKnown RBP12.31□□□□□ -0.44
CSPG4-201ENST00000308508 CA6P23280 308 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 CLEC18BQ6UXF7 455 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 PLPPR2Q96GM1 343 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 HSF4Q9ULV5 492 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 CACNA1SQ13698 1873 aa12.31□□□□□ -0.44
CSPG4-201ENST00000308508 TMEM255AQ5JRV8 349 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 SH2D5Q6ZV89 423 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 FLYWCH2Q96CP2 140 aaKnown RBP12.3□□□□□ -0.44
CSPG4-201ENST00000308508 GABRG3Q99928 467 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 A0A1W2PPC4 97 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 OR2W5A6NFC9 320 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 ELSPBP1Q96BH3 223 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 WDR13Q9H1Z4 485 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 CA10Q9NS85 328 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 ATG2BQ96BY7 2078 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 OOEPA6NGQ2 149 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 MGPP08493 103 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 TRBV5-4A0A0C4DH59 114 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 ADAP1O75689 374 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 IGF2P01344 180 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 MVDP53602 400 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 LEMD1Q68G75 181 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 GVQW1Q8N7I0 195 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 R3HDM4Q96D70 268 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 SIRT5Q9NXA8 310 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 MTCH2Q9Y6C9 303 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 C10orf113Q5VZT2 155 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 LRRC75AQ8NAA5 344 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 OR2I1PQ8NGU4 316 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 PPIL1Q9Y3C6 166 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 PCP4P48539 62 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 ZNF77Q15935 545 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 ABHD14AQ9BUJ0 271 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 SAP30LQ9HAJ7 183 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 HFEQ30201 348 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 FAM131CQ96AQ9 280 aa12.3□□□□□ -0.44
CSPG4-201ENST00000308508 CTXND1A0A1B0GTU2 59 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 CD300CQ08708 224 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 DNLZQ5SXM8 178 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 OR11H7Q8NGC8 314 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 RASL11BQ9BPW5 248 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 MT-ND6P03923 174 aa12.29□□□□□ -0.44
CSPG4-201ENST00000308508 SEC11BP0C7V7 166 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms