RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 COMMD4Q9H0A8 199 aa10.21□□□□□ -0.77
CD44-203ENST00000278386 ZNF286AQ9HBT8 521 aa10.21□□□□□ -0.77
CD44-203ENST00000278386 TAS2R3Q9NYW6 316 aa10.21□□□□□ -0.77
CD44-203ENST00000278386 TSSC4Q9Y5U2 329 aaPredicted RBP10.21□□□□□ -0.77
CD44-203ENST00000278386 IGKV1-12A0A0C4DH73 117 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 ODAMA1E959 279 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 J3QLW9 94 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 HSPB6O14558 160 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 KDM4BO94953 1096 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 OR2F2O95006 317 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 MPIG6BO95866 241 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 IGKV1D-12P01611 117 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 ZNF19P17023 458 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 NFYBP25208 207 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 GDNFP39905 211 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 MNDAP41218 407 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 GLP1RP43220 463 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 SLC35A2P78381 396 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 CD83Q01151 205 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 HLA-DRB5Q30154 266 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 KCTD20Q7Z5Y7 419 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 MYDGFQ969H8 173 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 RNF166Q96A37 237 aaPredicted RBP10.2□□□□□ -0.78
CD44-203ENST00000278386 CREB3L1Q96BA8 519 aa10.2□□□□□ -0.78
CD44-203ENST00000278386 MRPL48Q96GC5 212 aaKnown RBP10.2□□□□□ -0.78
CD44-203ENST00000278386 SLC33A1O00400 549 aaPredicted RBP10.19□□□□□ -0.78
CD44-203ENST00000278386 EI24O14681 340 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 ATP5HO75947 161 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 CLIC3O95833 236 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 IGLV1-47P01700 117 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 CSN2P05814 226 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 TMEM225BP0DP42 221 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 CD34P28906 385 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 PRRX1P54821 245 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 ALKBH1Q13686 389 aaKnown RBP10.19□□□□□ -0.78
CD44-203ENST00000278386 TPTE2P1Q5T6R2 138 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 LPCAT4Q643R3 524 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 CCDC144NLQ6NUI1 221 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 FDX2Q6P4F2 183 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 RNF144BQ7Z419 303 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 CHST4Q8NCG5 386 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 TSEN15Q8WW01 171 aaKnown RBP10.19□□□□□ -0.78
CD44-203ENST00000278386 TRUB1Q8WWH5 349 aaKnown RBP10.19□□□□□ -0.78
CD44-203ENST00000278386 PYDC1Q8WXC3 89 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 CORO2AQ92828 525 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 TOMM40LQ969M1 308 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 PELI1Q96FA3 418 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 COQ2Q96H96 371 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 RBM14Q96PK6 669 aaKnown RBP10.19□□□□□ -0.78
CD44-203ENST00000278386 PPIL3Q9H2H8 161 aaKnown RBP10.19□□□□□ -0.78
CD44-203ENST00000278386 ZCCHC4Q9H5U6 513 aa10.19□□□□□ -0.78
CD44-203ENST00000278386 SNTNA6NMZ2 147 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 OR4C45A6NMZ5 311 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 ZNF729A6NN14 1252 aaPredicted RBP10.18□□□□□ -0.78
CD44-203ENST00000278386 BUB1B-PAK6H3BSN5 160 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 DEGS1O15121 323 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 SULT1B1O43704 296 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 MT-ND2P03891 347 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 LMO1P25800 156 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 CCR9P51686 369 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 ZIK1Q3SY52 487 aaPredicted RBP10.18□□□□□ -0.78
CD44-203ENST00000278386 PAN3Q58A45 887 aaKnown RBP10.18□□□□□ -0.78
CD44-203ENST00000278386 MEDAGQ5VYS4 303 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 C10orf99Q6UWK7 81 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 SAXO1Q8IYX7 474 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 ACBD7Q8N6N7 88 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 RPEQ96AT9 228 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 HRASLS5Q96KN8 279 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 NR1H4Q96RI1 486 aaPredicted RBP10.18□□□□□ -0.78
CD44-203ENST00000278386 MYCBPQ99417 103 aaPredicted RBP10.18□□□□□ -0.78
CD44-203ENST00000278386 ALG8Q9BVK2 526 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 RHOFQ9HBH0 211 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 OR6C3Q9NZP0 311 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 MYRFQ9Y2G1 1151 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 MOB4Q9Y3A3 225 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 AMMECR1Q9Y4X0 333 aaPredicted RBP10.18□□□□□ -0.78
CD44-203ENST00000278386 HSPE1-MOB4S4R3N1 261 aa10.18□□□□□ -0.78
CD44-203ENST00000278386 H0YJX3 145 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 J3QRE1 110 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 M0QZK8 103 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 ALPLP05186 524 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 MTNR1BP49286 362 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 SNRPGP62308 76 aaKnown RBP10.17□□□□□ -0.78
CD44-203ENST00000278386 HES1Q14469 280 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 ZSCAN26Q16670 478 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 LTC4SQ16873 150 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 TCTEX1D4Q5JR98 221 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 ZNF691Q5VV52 312 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 Q6P435 159 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 LHFPL3Q86UP9 236 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 OR9G1Q8NH87 305 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 LGALS12Q96DT0 336 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 CPNE2Q96FN4 548 aaPredicted RBP10.17□□□□□ -0.78
CD44-203ENST00000278386 RCC1LQ96I51 464 aaKnown RBP10.17□□□□□ -0.78
CD44-203ENST00000278386 KIRREL1Q96J84 757 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 GPER1Q99527 375 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 ZNF649Q9BS31 505 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 FAM192AQ9GZU8 254 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 CALYQ9NYX4 217 aa10.17□□□□□ -0.78
CD44-203ENST00000278386 AASSQ9UDR5 926 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms