RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 HLA-DQB1P01920 261 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 OPN1MWP04001 364 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 ASAH2BP0C7U1 165 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 OPN1MW2P0DN77 364 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 OPN1MW3P0DN78 364 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 FOXO1Q12778 655 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 SLC24A4Q8NFF2 622 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 ADAT3Q96EY9 351 aaPredicted RBP9.46□□□□□ -0.89
CD44-201ENST00000263398 TCFL5Q9UL49 500 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 TIMM9Q9Y5J7 89 aa9.46□□□□□ -0.89
CD44-201ENST00000263398 TNS1Q9HBL0 1735 aaKnown RBP9.46□□□□□ -0.9
CD44-201ENST00000263398 RTTNQ86VV8 2226 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 SERTM2A0A1B0GWG4 89 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 CHST1O43916 411 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 DXOO77932 396 aaKnown RBP9.46□□□□□ -0.9
CD44-201ENST00000263398 IGKV1D-16P01601 117 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 HLA-GP17693 338 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 ZXDAP98168 799 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 CLPPQ16740 277 aaPredicted RBP9.46□□□□□ -0.9
CD44-201ENST00000263398 AWAT1Q58HT5 328 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 OR2M3Q8NG83 312 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 OR5D13Q8NGL4 314 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 OR2T6Q8NHC8 308 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 CFHR5Q9BXR6 569 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 MYOZ1Q9NP98 299 aaPredicted RBP9.46□□□□□ -0.9
CD44-201ENST00000263398 OR6C3Q9NZP0 311 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 MIA3Q5JRA6 1907 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 NGFRP08138 427 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 MMP7P09237 267 aaPredicted RBP9.46□□□□□ -0.9
CD44-201ENST00000263398 MGAT2Q10469 447 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 FUT5Q11128 374 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 MOB3BQ86TA1 216 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 OR2I1PQ8NGU4 316 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 MRGPRDQ8TDS7 321 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 FKBP11Q9NYL4 201 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 ARL2-SNX15V9GYD0 113 aa9.46□□□□□ -0.9
CD44-201ENST00000263398 ZNF638Q14966 1978 aaKnown RBP9.45□□□□□ -0.9
CD44-201ENST00000263398 TET1Q8NFU7 2136 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 A0A1B0GTQ1 180 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 A0A1W2PPC1 479 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 KIR3DL2P43630 455 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 DYNLT3P51808 116 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 BSXQ3C1V8 233 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 ZNF721Q8TF20 911 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 FAM122AQ96E09 287 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 GPX7Q96SL4 187 aaPredicted RBP9.45□□□□□ -0.9
CD44-201ENST00000263398 NAT8BQ9UHF3 227 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 YTHDF2Q9Y5A9 579 aaKnown RBP9.45□□□□□ -0.9
CD44-201ENST00000263398 MEX3AA1L020 520 aaKnown RBP9.45□□□□□ -0.9
CD44-201ENST00000263398 PNPP00491 289 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 TTRP02766 147 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 KIR2DS2P43631 304 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 ZP4Q12836 540 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 TMEM65Q6PI78 240 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 HOGA1Q86XE5 327 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 ADTRPQ96IZ2 230 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 ATP5SQ99766 215 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 CXXC4Q9H2H0 198 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 CA10Q9NS85 328 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 IL36GQ9NZH8 169 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 TNFSF18Q9UNG2 199 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 KLHDC2Q9Y2U9 406 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 LIPGQ9Y5X9 500 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 AP4M1O00189 453 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 CA11O75493 328 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 CCL3P10147 92 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 CCL4P13236 92 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 FSTP19883 344 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 SPINK14Q6IE38 97 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 GFRALQ6UXV0 394 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 UCN2Q96RP3 112 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 GLRX2Q9NS18 164 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 PILRAQ9UKJ1 303 aa9.45□□□□□ -0.9
CD44-201ENST00000263398 hADV38S2A0JD32 116 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 C7orf77A4D0Y5 90 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 SLC31A2O15432 143 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 IFI6P09912 130 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 SEC11BP0C7V7 166 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 OR5I1Q13606 314 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 GAPTQ8N292 157 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 OR2H1Q9GZK4 316 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 IGHV3-43A0A0B4J1X8 118 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 DUXBA0A1W2PPF3 345 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 J3QT63 122 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 IGHV4-34P06331 123 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 IGHV3-43DP0DP04 118 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 PNLIPP16233 465 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 CHRNA7P36544 502 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 GNG10P50151 68 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 KLF3P57682 345 aaPredicted RBP9.44□□□□□ -0.9
CD44-201ENST00000263398 HIST1H3AP68431 136 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 ETFRF1Q6IPR1 90 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 MOB3AQ96BX8 217 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 VAMP8Q9BV40 100 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 GPR87Q9BY21 358 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 AMDHD2Q9Y303 409 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 ARG1P05089 322 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 OPRK1P41145 380 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 MEOX2P50222 304 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 NAAAQ02083 359 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms