RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MAFAQ8NHW3 353 aaPredicted RBP16.12■□□□□ 0.17
CPSF3-201ENST00000238112 SPIN2AQ99865 258 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 SPIN2BQ9BPZ2 258 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 DEPPQ9NTK1 212 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A10PA6NDY2 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A18PA6NE21 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A16PA6NEW6 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A20PA6NIJ5 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A8PA6NJQ4 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A7PA6NKC0 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A22PA8MWA6 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A12PA8MX19 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A5PA8MXJ8 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A23PA8MXZ1 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 UMAD1C9J7I0 102 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 MT-ND4LP03901 98 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A15PP0C7V4 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A13PP0C7W8 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A14PP0C7W9 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 FAM90A24PP0C7X0 464 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 CCNOP22674 350 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 ZNF266Q14584 549 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 DAZAP2Q15038 168 aaPredicted RBP16.12■□□□□ 0.17
CPSF3-201ENST00000238112 WDR5BQ86VZ2 330 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 SUMF1Q8NBK3 374 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 OR56B2PQ8NGI1 322 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 SLAMF9Q96A28 289 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 KCNJ16Q9NPI9 418 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 TCFL5Q9UL49 500 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 NOSIPQ9Y314 301 aaKnown RBP16.12■□□□□ 0.17
CPSF3-201ENST00000238112 MED19A0JLT2 244 aaPredicted RBP16.11■□□□□ 0.17
CPSF3-201ENST00000238112 FAM24AA6NFZ4 105 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 MRPL33O75394 65 aaKnown RBP16.11■□□□□ 0.17
CPSF3-201ENST00000238112 BCL3P20749 454 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 HOXA6P31267 233 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 CYB561P49447 251 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 MEOX2P50222 304 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 CLINT1Q14677 625 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 C20orf24Q9BUV8 137 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 SLC35B3Q9H1N7 401 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 FBXO7Q9Y3I1 522 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 A0A1B0GV50 99 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 RNF212Q495C1 297 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 NRN1LQ496H8 165 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 CD300LFQ8TDQ1 290 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 TMEM45BQ96B21 275 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 USB1Q9BQ65 265 aaKnown RBP16.11■□□□□ 0.17
CPSF3-201ENST00000238112 MRPS18CQ9Y3D5 142 aaKnown RBP16.11■□□□□ 0.17
CPSF3-201ENST00000238112 SHANK1Q9Y566 2161 aa16.11■□□□□ 0.17
CPSF3-201ENST00000238112 CER1O95813 267 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 F10P00742 488 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 S100A6P06703 90 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 HAAOP46952 286 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 SNRPEP62304 92 aaKnown RBP16.1■□□□□ 0.17
CPSF3-201ENST00000238112 POLR2GP62487 172 aaKnown RBP eCLIP16.1■□□□□ 0.17
CPSF3-201ENST00000238112 PRDX4Q13162 271 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 Q6ZS49 121 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 Q8NFD4 153 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 SNIP1Q8TAD8 396 aaKnown RBP16.1■□□□□ 0.17
CPSF3-201ENST00000238112 TMEM56Q96MV1 263 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 IP6K3Q96PC2 410 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 IER2Q9BTL4 223 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 TUBA4BQ9H853 241 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 Q9N2K0 584 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 ATPIF1Q9UII2 106 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 TMEM56-RWDD3S4R434 201 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 K7N7A8 449 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 SSSCA1O60232 199 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 GPM6AP51674 278 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 GFRA1P56159 465 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 VAMP2P63027 116 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 TRIM61Q5EBN2 209 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 KRBOX4Q5JUW0 171 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 CDCP2Q5VXM1 449 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 COLCA1Q6ZS62 124 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 SLC25A31Q9H0C2 315 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 PLEKHF2Q9H8W4 249 aa16.1■□□□□ 0.17
CPSF3-201ENST00000238112 TMEM265A0A087WTH1 108 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 PINLYPA6NC86 204 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 PITX3O75364 302 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 PPP1CCP36873 323 aaKnown RBP16.09■□□□□ 0.17
CPSF3-201ENST00000238112 FGF12P61328 243 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 RND3P61587 244 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 ARF1P84077 181 aaKnown RBP16.09■□□□□ 0.17
CPSF3-201ENST00000238112 DCAF12Q5T6F0 453 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 C9orf135Q5VTT2 229 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 SLC23A3Q6PIS1 610 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 ZNF818PQ6ZRF7 136 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 OR2G3Q8NGZ4 309 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 NEK7Q8TDX7 302 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 ISOC2Q96AB3 205 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 C11orf1Q9H5F2 150 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 NCKAP5O14513 1909 aa16.09■□□□□ 0.17
CPSF3-201ENST00000238112 A0A096LPE4 126 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 A0A1W2PPZ6 126 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 IGSF23A1L1A6 192 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 ADAM20O43506 726 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 SCTP09683 121 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 OMGP23515 440 aa16.08■□□□□ 0.17
CPSF3-201ENST00000238112 LMO1P25800 156 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms