RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 MNX1P50219 401 aaPredicted RBP11.94□□□□□ -0.5
SF3A1-201ENST00000215793 RPEL1Q2QD12 228 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 BSXQ3C1V8 233 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 BHLHA15Q7RTS1 189 aaPredicted RBP11.94□□□□□ -0.5
SF3A1-201ENST00000215793 SCMH1Q96GD3 660 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 CRISPLD2Q9H0B8 497 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 V9GYH0 126 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 TNRC6CQ9HCJ0 1690 aaKnown RBP11.94□□□□□ -0.5
SF3A1-201ENST00000215793 GLI3P10071 1580 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 SLC25A42Q86VD7 318 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 PTPMT1Q8WUK0 201 aaPredicted RBP11.94□□□□□ -0.5
SF3A1-201ENST00000215793 MS4A10Q96PG2 267 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 SLC7A10Q9NS82 523 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 C1RLQ9NZP8 487 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 NHLH1Q02575 133 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 NHLH2Q02577 135 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 SIGIRRQ6IA17 410 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 ASB5Q8WWX0 329 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 ST6GAL2Q96JF0 529 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 NAT8Q9UHE5 227 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 MS4A18H0YCH9 400 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 K7ESF4 209 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 GEMIN2O14893 280 aaKnown RBP11.94□□□□□ -0.5
SF3A1-201ENST00000215793 ZNF154Q13106 437 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 MS4A18Q3C1V0 323 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 BLNKQ8WV28 456 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 APOBEC4Q8WW27 367 aaKnown RBP11.94□□□□□ -0.5
SF3A1-201ENST00000215793 SEC11CQ9BY50 192 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 WDR54Q9H977 334 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 Q9N2K0 584 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 SCN1AP35498 2009 aa11.94□□□□□ -0.5
SF3A1-201ENST00000215793 A0A1W2PNV4 684 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 HAND1O96004 215 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 CCL4P13236 92 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 ZBTB34Q8NCN2 500 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 OR5A2Q8NGI9 324 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 OR2H1Q9GZK4 316 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 DOCK2Q92608 1830 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 CDIPTO14735 213 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 HPXP02790 462 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 ORM2P19652 201 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 DYNLT3P51808 116 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 COL13A1Q5TAT6 717 aaPredicted RBP11.93□□□□□ -0.5
SF3A1-201ENST00000215793 PDPNQ86YL7 162 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 DTD1Q8TEA8 209 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 OPN4Q9UHM6 478 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 CABIN1Q9Y6J0 2220 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 CHST1O43916 411 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 BGLAPP02818 100 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 IRF3Q14653 427 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 TNXAQ16473 311 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 TMEM183BQ1AE95 376 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 SFTPA1Q8IWL2 248 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 F5H697 171 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 TMPRSS2O15393 492 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 SPINK4O60575 86 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 OR5AL1P0C617 328 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 SNRPEP62304 92 aaKnown RBP11.93□□□□□ -0.5
SF3A1-201ENST00000215793 LYPD8Q6UX82 237 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 GPR35Q9HC97 309 aa11.93□□□□□ -0.5
SF3A1-201ENST00000215793 ZNF716A6NP11 495 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 SPNS3Q6ZMD2 512 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 ZAR1Q86SH2 424 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 STPG2Q8N412 459 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 SLC2A9Q9NRM0 540 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 MRPS18AQ9NVS2 196 aaKnown RBP11.92□□□□□ -0.5
SF3A1-201ENST00000215793 OR2T8A6NH00 312 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 MAGEA5P43359 124 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 LYZP61626 148 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 SPINK9Q5DT21 86 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 GAPTQ8N292 157 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 OR2T10Q8NGZ9 312 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 CHST5Q9GZS9 411 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 MIXL1Q9H2W2 232 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 KCNK15Q9H427 330 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 IFT22Q9H7X7 185 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 DOK5Q9P104 306 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 RNF7Q9UBF6 113 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 MBD1Q9UIS9 605 aaPredicted RBP11.92□□□□□ -0.5
SF3A1-201ENST00000215793 KIAA1551Q9HCM1 1747 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 CD82P27701 267 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 PMELP40967 661 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 LGALS7P47929 136 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 ANKRD55Q3KP44 614 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 SEZ6L2Q6UXD5 910 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 SLC26A10Q8NG04 563 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 SAP30LQ9HAJ7 183 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 TINAGQ9UJW2 476 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 TRPM6Q9BX84 2022 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 NEURL1O76050 574 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 FAM87AP0C7U9 286 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 RPS4XP62701 263 aaKnown RBP11.92□□□□□ -0.5
SF3A1-201ENST00000215793 LSM11P83369 360 aaKnown RBP eCLIP11.92□□□□□ -0.5
SF3A1-201ENST00000215793 TSPO2Q5TGU0 170 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 FAM78BQ5VT40 261 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 RND1Q92730 232 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 MS4A5Q9H3V2 200 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 TMEM38BQ9NVV0 291 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 NTMQ9P121 344 aa11.92□□□□□ -0.5
SF3A1-201ENST00000215793 HRKO00198 91 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms