RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZMYND11Q15326 602 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 SPRNQ5BIV9 151 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 Q6P435 159 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 SUMF2Q8NBJ7 301 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 OR5H2Q8NGV7 314 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 PLPPR2Q96GM1 343 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 CHST6Q9GZX3 395 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 IFT22Q9H7X7 185 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 HES4Q9HCC6 221 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 NDRG3Q9UGV2 375 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 NBASA2RRP1 2371 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 HSPB6O14558 160 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 WNT9BO14905 357 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 IFNA6P05013 189 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 GNLYP22749 145 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 TAS2R46P59540 309 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 HOXA4Q00056 320 aaPredicted RBP14.26□□□□□ -0.13
CLN3-252ENST00000636907 ADIPOQQ15848 244 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 ST3GAL2Q16842 350 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 Q6ZPA2 131 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 OR5AP2Q8NGF4 316 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 MRGPRFQ96AM1 343 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 LRRC46Q96FV0 321 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 OR2V2Q96R30 315 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 SLC25A21Q9BQT8 299 aaPredicted RBP14.26□□□□□ -0.13
CLN3-252ENST00000636907 SPACA1Q9HBV2 294 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 C12orf4Q9NQ89 552 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 C1orf123Q9NWV4 160 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 EDARQ9UNE0 448 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 SHISA9B4DS77 424 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 MCRIP1C9JLW8 97 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 H3BUI4 141 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 HS3ST1O14792 307 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 DEGS1O15121 323 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 PRAF2O60831 178 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 CCNKO75909 580 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 RLN1P04808 185 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 OR4A8P0C604 315 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 ZNF44P15621 663 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 RBMXP38159 391 aaKnown RBP14.25□□□□□ -0.13
CLN3-252ENST00000636907 ZNF81P51508 661 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 RRAS2P62070 204 aaPredicted RBP14.25□□□□□ -0.13
CLN3-252ENST00000636907 SORDQ00796 357 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 CBX3Q13185 183 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 CHRFAM7AQ494W8 412 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 DMRTC2Q8IXT2 367 aaPredicted RBP14.25□□□□□ -0.13
CLN3-252ENST00000636907 NEK7Q8TDX7 302 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 DACT3Q96B18 629 aaPredicted RBP14.25□□□□□ -0.13
CLN3-252ENST00000636907 MEGF10Q96KG7 1140 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 WDR13Q9H1Z4 485 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 OR51J1Q9H342 316 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 ANXA10Q9UJ72 324 aa14.25□□□□□ -0.13
CLN3-252ENST00000636907 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.24□□□□□ -0.13
CLN3-252ENST00000636907 hCG_1807616A0A1W2PRN6 198 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 OR2AT4A6NND4 320 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 A8MV72 311 aaPredicted RBP14.24□□□□□ -0.13
CLN3-252ENST00000636907 SDCBPO00560 298 aaPredicted RBP14.24□□□□□ -0.13
CLN3-252ENST00000636907 HPXP02790 462 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 VSIG10L2P0DP72 767 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 OR3A3P47888 321 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 TFF3Q07654 80 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 ZNF146Q15072 292 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 GLDNQ6ZMI3 551 aaPredicted RBP14.24□□□□□ -0.13
CLN3-252ENST00000636907 ARRDC1Q8N5I2 433 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 GALNT11Q8NCW6 608 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 RDH5Q92781 318 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 SEC22CQ9BRL7 303 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 DPCDQ9BVM2 203 aaPredicted RBP14.24□□□□□ -0.13
CLN3-252ENST00000636907 EHFQ9NZC4 300 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 RELNP78509 3460 aa14.24□□□□□ -0.13
CLN3-252ENST00000636907 TMEM82A0PJX8 343 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 SIRPB1O00241 398 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 OR2H2O95918 312 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 IL5P05113 134 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 GLRA1P23415 457 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 C4orf17Q53FE4 359 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 SPIN3Q5JUX0 258 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 ATPAF1Q5TC12 328 aaPredicted RBP14.23□□□□□ -0.13
CLN3-252ENST00000636907 ACP7Q6ZNF0 438 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 OVCH2Q7RTZ1 564 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 SLC36A1Q7Z2H8 476 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 OR6F1Q8NGZ6 308 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 LRRC29Q8WV35 223 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 ITLN1Q8WWA0 313 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 NEUROG1Q92886 237 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 CNTNAP3BQ96NU0 1288 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 CNTNAP3Q9BZ76 1288 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 PPA2Q9H2U2 334 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 CHMP1AQ9HD42 196 aaPredicted RBP14.23□□□□□ -0.13
CLN3-252ENST00000636907 VSIG4Q9Y279 399 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 USP24Q9UPU5 2620 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 SLC33A1O00400 549 aaPredicted RBP14.23□□□□□ -0.13
CLN3-252ENST00000636907 KALRNO60229 2985 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 NAPSAO96009 420 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 IGHV1-46P01743 117 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 GLAP06280 429 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 CD3EP07766 207 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 ARPC4P59998 168 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 TSPAN5P62079 268 aa14.23□□□□□ -0.13
CLN3-252ENST00000636907 TLE1Q04724 770 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms