RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 Q8IYB0 196 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 ENTHD1Q8IYW4 607 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 WFDC9Q8NEX5 89 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 EME1Q96AY2 570 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 SPACA5Q96QH8 159 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 RIBC2Q9H4K1 309 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 TRBV2A0A0J9YWF9 115 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 OR2H2O95918 312 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 CYB5AP00167 134 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 ALDOBP05062 364 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 ZBTB49Q6ZSB9 765 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 DNAAF1Q8NEP3 725 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 OR5D18Q8NGL1 313 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 PP6455Q8WZ26 134 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 MYDGFQ969H8 173 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 GABARAPL1Q9H0R8 117 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 SEBOXQ9HB31 216 aaPredicted RBP12.9□□□□□ -0.34
CLN3-246ENST00000636228 HMG20AQ9NP66 347 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 FRRS1LQ9P0K9 344 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 DPM3Q9P2X0 92 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 UBE2J1Q9Y385 318 aaPredicted RBP12.9□□□□□ -0.34
CLN3-246ENST00000636228 AP4S1Q9Y587 144 aa12.9□□□□□ -0.34
CLN3-246ENST00000636228 H3BUI4 141 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 UBCP0CG48 685 aaKnown RBP12.89□□□□□ -0.35
CLN3-246ENST00000636228 ZNF20P17024 532 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 FASP25445 335 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 ERP29P30040 261 aaKnown RBP12.89□□□□□ -0.35
CLN3-246ENST00000636228 NANOS3P60323 173 aaKnown RBP12.89□□□□□ -0.35
CLN3-246ENST00000636228 ISL1P61371 349 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 PDZK1IP1Q13113 114 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 IL18R1Q13478 541 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 FAM220AQ7Z4H9 259 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 CCDC54Q8NEL0 328 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 OR2G2Q8NGZ5 317 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 OR10AC1Q8NH08 325 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 CAPSLQ8WWF8 208 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 C10orf35Q96D05 121 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 SLC25A33Q9BSK2 321 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 ZNF286AQ9HBT8 521 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 EXOSC4Q9NPD3 245 aaKnown RBP12.89□□□□□ -0.35
CLN3-246ENST00000636228 GLS2Q9UI32 602 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 NOTCH3Q9UM47 2321 aa12.89□□□□□ -0.35
CLN3-246ENST00000636228 TRGV10A0A0A0MS01 117 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 K7EIL1 84 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 SH2D1BO14796 132 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 PF4P02776 101 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 PRKACBP22694 351 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 BRS3P32247 399 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 KRTAP10-11P60412 298 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 BDH1Q02338 343 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 RBM39Q14498 530 aaKnown RBP12.88□□□□□ -0.35
CLN3-246ENST00000636228 KPNB1Q14974 876 aaKnown RBP12.88□□□□□ -0.35
CLN3-246ENST00000636228 C9orf152Q5JTZ5 239 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 SPIN3Q5JUX0 258 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 OR51A4Q8NGJ6 313 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 OR8J1Q8NGP2 316 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 GAL3ST2Q9H3Q3 398 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 LIN7BQ9HAP6 207 aa12.88□□□□□ -0.35
CLN3-246ENST00000636228 TSSC4Q9Y5U2 329 aaPredicted RBP12.88□□□□□ -0.35
CLN3-246ENST00000636228 SAC3D1A6NKF1 404 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 LEUTXA8MZ59 168 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 IGLV1-47P01700 117 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 AMY1AP04745 511 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 AMY2AP04746 511 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 OCM2P0CE71 109 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 OCMP0CE72 109 aaPredicted RBP12.87□□□□□ -0.35
CLN3-246ENST00000636228 ZNF44P15621 663 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 OR3A4PP47883 348 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 CDC42P60953 191 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 KHDC1LQ5JSQ8 128 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 TMEM244Q5VVB8 128 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 OR52W1Q6IF63 320 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 HEPN1Q6WQI6 88 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 LHFPL2Q6ZUX7 228 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 UTS2BQ765I0 119 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 RTN4RL2Q86UN3 420 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 OR13C9Q8NGT0 318 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 ZNF596Q8TC21 504 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 CORO2AQ92828 525 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 OPALINQ96PE5 141 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 RBM14Q96PK6 669 aaKnown RBP12.87□□□□□ -0.35
CLN3-246ENST00000636228 GABARAPL3Q9BY60 117 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 NEK6Q9HC98 313 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 OAZ3Q9UMX2 235 aa12.87□□□□□ -0.35
CLN3-246ENST00000636228 WI2-2373I1.2A0A1W2PRP0 233 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 BUB1B-PAK6H3BSN5 160 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 TOR1AO14656 332 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 OR2F2O95006 317 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 IGHV3-7P01780 117 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 ATXN7L3Q14CW9 347 aaPredicted RBP12.86□□□□□ -0.35
CLN3-246ENST00000636228 HLA-DRB5Q30154 266 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 DEFB121Q5J5C9 76 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 TPTE2P1Q5T6R2 138 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 Q6P435 159 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 C16orf82Q7Z2V1 217 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 COQ2Q96H96 371 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 AKR1E2Q96JD6 320 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 MBOAT4Q96T53 435 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 INPP5EQ9NRR6 644 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 TAS2R3Q9NYW6 316 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms