RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ATPAF1Q5TC12 328 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-213ENST00000620219 TCTE3Q8IZS6 198 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 OR51H1Q8NH63 302 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 GNG12Q9UBI6 72 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 PURGQ9UJV8 347 aaKnown RBP13.5□□□□□ -0.25
CPSF1-213ENST00000620219 LSM5Q9Y4Y9 91 aaKnown RBP13.5□□□□□ -0.25
CPSF1-213ENST00000620219 WNK2Q9Y3S1 2297 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 POM121CA8CG34 1229 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 RLN2P04090 185 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 OTX1P32242 354 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-213ENST00000620219 TAS2R31P59538 309 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 PPP1R1AQ13522 171 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 DOLPP1Q86YN1 238 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 CMTM1Q8IZ96 169 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 TPRX1Q8N7U7 411 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 PPP1R35Q8TAP8 253 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 MEMO1Q9Y316 297 aa13.5□□□□□ -0.25
CPSF1-213ENST00000620219 C7orf66A4D0T2 115 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 AKR1C2P52895 323 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 CCL8P80075 99 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 DHRS2Q13268 280 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 MOGAT3Q86VF5 341 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 FAM234AQ9H0X4 552 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 DLL4Q9NR61 685 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 A0A0A6YYD4 124 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 PROB1E7EW31 1015 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 H0YL77 283 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 CDK2AP1O14519 115 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 RAC2P15153 192 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 CCL1P22362 96 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 FOXL2NBQ6ZUU3 175 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 OR11L1Q8NGX0 322 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 FAM122AQ96E09 287 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 RNF150Q9ULK6 438 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 PHF1O43189 567 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-213ENST00000620219 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-213ENST00000620219 PTX4Q96A99 478 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 SFXN3Q9BWM7 321 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 AKAP13Q12802 2813 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 LOC390937A0A1W2PQ73 354 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 MSTNO14793 375 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 NXPH3O95157 252 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 NDUFB7P17568 137 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 RBM11P57052 281 aaKnown RBP13.49□□□□□ -0.25
CPSF1-213ENST00000620219 HIST1H3AP68431 136 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 HIST2H3PS2Q5TEC6 136 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 HIST2H3AQ71DI3 136 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 CCL17Q92583 94 aa13.49□□□□□ -0.25
CPSF1-213ENST00000620219 ZNF471Q9BX82 626 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-213ENST00000620219 J3QT63 122 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 SPDEFO95238 335 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 KLRB1Q12918 225 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 ADAD2Q8NCV1 583 aaKnown RBP13.48□□□□□ -0.25
CPSF1-213ENST00000620219 OR5AP2Q8NGF4 316 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 ZFAND1Q8TCF1 268 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 IGKV1-27A0A075B6S5 117 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 IGHV3OR15-7A0A075B7D8 119 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 OR2AT4A6NND4 320 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 ATXN7O15265 892 aaPredicted RBP13.48□□□□□ -0.25
CPSF1-213ENST00000620219 ALDH3B1P43353 468 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 GRK1Q15835 563 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 IGF2-ASQ6U949 168 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 ZNF695Q8IW36 515 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 OR11H4Q8NGC9 324 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 OR10J5Q8NHC4 309 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 H1FXQ92522 213 aaKnown RBP13.48□□□□□ -0.25
CPSF1-213ENST00000620219 PLK3Q9H4B4 646 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 NAAAQ02083 359 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 TMEM211Q6ICI0 200 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 IGFL3Q6UXB1 125 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 MYPOPQ86VE0 399 aaPredicted RBP13.48□□□□□ -0.25
CPSF1-213ENST00000620219 LINC01560Q8TB33 94 aa13.48□□□□□ -0.25
CPSF1-213ENST00000620219 SERPINE2P07093 398 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 NFYBP25208 207 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 TNFAIP6P98066 277 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-213ENST00000620219 SSBP1Q04837 148 aaKnown RBP13.47□□□□□ -0.25
CPSF1-213ENST00000620219 DCAF12L2Q5VW00 463 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 FBXW12Q6X9E4 464 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 AQP3Q92482 292 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 IFITM2Q01629 132 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 OR2B11Q5JQS5 317 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 SCCPDHQ8NBX0 429 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 MFFQ9GZY8 342 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 RDH8Q9NYR8 311 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 VSIG4Q9Y279 399 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 KIR2DS1A0A191URI9 304 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 DHRS7CA6NNS2 312 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 TUSC2O75896 110 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 KIR2DS4P43632 304 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 RAP2BP61225 183 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 KIR2DS1Q14954 304 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 C2orf68Q2NKX9 166 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 ZNF626Q68DY1 528 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 IGFL2Q6UWQ7 119 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 CCDC71LQ8N9Z2 235 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 MRPS24Q96EL2 167 aaKnown RBP13.47□□□□□ -0.25
CPSF1-213ENST00000620219 CXXC4Q9H2H0 198 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 ANXA10Q9UJ72 324 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 CFAP47Q6ZTR5 3102 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 PIGPP57054 158 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms