RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SLC2A2P11168 524 aaPredicted RBP16.38■□□□□ 0.21
UPF3A-211ENST00000618700 ARSBP15848 533 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 MGMTP16455 207 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 SERPINB10P48595 397 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 CAPZA1P52907 286 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 COL10A1Q03692 680 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 UNC119Q13432 240 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 WDR25Q64LD2 544 aaPredicted RBP16.38■□□□□ 0.21
UPF3A-211ENST00000618700 OR10K2Q6IF99 312 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 Q6P435 159 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 OR2W3Q7Z3T1 314 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 LINC00596Q86U02 117 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 ZNF561Q8N587 486 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 KCNG3Q8TAE7 436 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 C18orf12Q96KH6 178 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 Q96M66 194 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 RBM38Q9H0Z9 239 aaKnown RBP16.38■□□□□ 0.21
UPF3A-211ENST00000618700 BANF2Q9H503 90 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 LIN7BQ9HAP6 207 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 ST3GAL6Q9Y274 331 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 MALRD1Q5VYJ5 2156 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 DVL1O14640 695 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 SH2D1BO14796 132 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 CRTAPO75718 401 aaPredicted RBP16.37■□□□□ 0.21
UPF3A-211ENST00000618700 OR2H2O95918 312 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 LMO1P25800 156 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 NPY4RP50391 375 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 KRTAP1-1Q07627 177 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 ESCO2Q56NI9 601 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 ZNRF1Q8ND25 227 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 NDNFQ8TB73 568 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 FAM46BQ96A09 425 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 ISOC1Q96CN7 298 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 SSBP3Q9BWW4 388 aaPredicted RBP16.37■□□□□ 0.21
UPF3A-211ENST00000618700 IFT22Q9H7X7 185 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 ZNF581Q9P0T4 197 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 CLN8Q9UBY8 286 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 GLS2Q9UI32 602 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 DAPK2Q9UIK4 370 aa16.37■□□□□ 0.21
UPF3A-211ENST00000618700 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.37■□□□□ 0.214e-11■■□□□ 13.4
UPF3A-211ENST00000618700 A0A0B4J203 849 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 GEMIN2O14893 280 aaKnown RBP16.36■□□□□ 0.21
UPF3A-211ENST00000618700 PHF1O43189 567 aaPredicted RBP16.36■□□□□ 0.21
UPF3A-211ENST00000618700 MPIG6BO95866 241 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 ZFP36P26651 326 aaKnown RBP16.36■□□□□ 0.21
UPF3A-211ENST00000618700 GZMKP49863 264 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 GNB2P62879 340 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 IKZF1Q13422 519 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 MPV17LQ2QL34 196 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 C2orf76Q3KRA6 126 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 C17orf107Q6ZR85 190 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 USP43Q70EL4 1123 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 FGFRL1Q8N441 504 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 CHST4Q8NCG5 386 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 SLC25A46Q96AG3 418 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 TMEM59Q9BXS4 323 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 SELENOIQ9C0D9 397 aa16.36■□□□□ 0.21
UPF3A-211ENST00000618700 POLR3KQ9Y2Y1 108 aaPredicted RBP16.36■□□□□ 0.21
UPF3A-211ENST00000618700 TMEM272A0A1B0GTI8 110 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 TMEM82A0PJX8 343 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A10PA6NDY2 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A18PA6NE21 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A16PA6NEW6 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A20PA6NIJ5 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A8PA6NJQ4 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A7PA6NKC0 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A22PA8MWA6 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A12PA8MX19 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A5PA8MXJ8 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A23PA8MXZ1 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 B4DSR2 109 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 K7N7A8 449 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 NDUFB3O43676 98 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 PSPNO60542 156 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 TMEM127O75204 238 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FOXH1O75593 365 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 INHBBP09529 407 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A15PP0C7V4 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A13PP0C7W8 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A14PP0C7W9 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM90A24PP0C7X0 464 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 CD99P14209 185 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FOSL1P15407 271 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 RPS27AP62979 156 aaKnown RBP16.35■□□□□ 0.21
UPF3A-211ENST00000618700 PDCD1Q15116 288 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 LRRC10Q5BKY1 277 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 CROCCP3Q8IVE0 287 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 LINC01356Q8N9X3 169 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 TMEM185AQ8NFB2 350 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 MSI2Q96DH6 328 aaKnown RBP16.35■□□□□ 0.21
UPF3A-211ENST00000618700 POM121Q96HA1 1249 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 TM2D1Q9BX74 207 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 BARHL1Q9BZE3 327 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 FAM234AQ9H0X4 552 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 DCSTAMPQ9H295 470 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 SLC25A10Q9UBX3 287 aaPredicted RBP16.35■□□□□ 0.21
UPF3A-211ENST00000618700 OR5V1Q9UGF6 321 aa16.35■□□□□ 0.21
UPF3A-211ENST00000618700 H3BMQ9 156 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 SIRPB1O00241 398 aa16.34■□□□□ 0.21
UPF3A-211ENST00000618700 SLC33A1O00400 549 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms