RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MTCH1Q9NZJ7 389 aa10.61□□□□□ -0.71
UPF1-208ENST00000600012 MRPS7Q9Y2R9 242 aaKnown RBP10.61□□□□□ -0.71
UPF1-208ENST00000600012 C17orf100A8MU93 164 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 F8VVB4 439 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 F8VWA3 439 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 TRAPPC2LH3BP13 241 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 CDIPTO14735 213 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 EPHA1P21709 976 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 CD40LGP29965 261 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 VEGFCP49767 419 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 TAS2R20P59543 309 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 HILS1P60008 231 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 RPS27AP62979 156 aaKnown RBP10.6□□□□□ -0.71
UPF1-208ENST00000600012 TNFAIP6P98066 277 aaPredicted RBP10.6□□□□□ -0.71
UPF1-208ENST00000600012 MZT1Q08AG7 82 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 PCGF3Q3KNV8 242 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 RNASE12Q5GAN4 147 aaKnown RBP10.6□□□□□ -0.71
UPF1-208ENST00000600012 FAM76BQ5HYJ3 339 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 TMEM69Q5SWH9 247 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 SNX29P2Q8IUI4 249 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 C11orf53Q8IXP5 236 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 SAXO1Q8IYX7 474 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 OR51T1Q8NGJ9 327 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 GCDHQ92947 438 aaPredicted RBP10.6□□□□□ -0.71
UPF1-208ENST00000600012 CYYR1Q96J86 154 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 SDHCQ99643 169 aaPredicted RBP10.6□□□□□ -0.71
UPF1-208ENST00000600012 SOSTQ9BQB4 213 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 TLNRD1Q9H1K6 362 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 RBFOX1Q9NWB1 397 aaKnown RBP10.6□□□□□ -0.71
UPF1-208ENST00000600012 C1orf123Q9NWV4 160 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 PCDHB10Q9UN67 800 aa10.6□□□□□ -0.71
UPF1-208ENST00000600012 TENM1Q9UKZ4 2725 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 hCG_1807616A0A1W2PRN6 198 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 METTL21EPA6NDL7 271 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 TRIM77I1YAP6 450 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 SOCS1O15524 211 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 ZNF780AO75290 641 aaPredicted RBP10.59□□□□□ -0.71
UPF1-208ENST00000600012 PGA5P0DJD9 388 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 PTHLHP12272 177 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 TNFSF4P23510 183 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 PITPNBP48739 271 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 SRP9P49458 86 aaKnown RBP10.59□□□□□ -0.71
UPF1-208ENST00000600012 PPP5CP53041 499 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 GMFBP60983 142 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 HOXA4Q00056 320 aaPredicted RBP10.59□□□□□ -0.71
UPF1-208ENST00000600012 GPR176Q14439 515 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 PIGYQ3MUY2 71 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 PYDC2Q56P42 97 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 PYHIN1Q6K0P9 492 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 FAHD2BQ6P2I3 314 aaPredicted RBP10.59□□□□□ -0.71
UPF1-208ENST00000600012 WDR82Q6UXN9 313 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 BAIAP2L2Q6UXY1 529 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 OSR2Q8N2R0 312 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 C3orf56Q8N813 242 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 FAM216AQ8WUB2 273 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 EMG1Q92979 244 aaKnown RBP10.59□□□□□ -0.71
UPF1-208ENST00000600012 BORCS5Q969J3 196 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 PHF21AQ96BD5 680 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 RAB39BQ96DA2 213 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 FAHD2AQ96GK7 314 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 Q96M66 194 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 JMJD8Q96S16 334 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 ABHD1Q96SE0 405 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 URM1Q9BTM9 101 aaKnown RBP10.59□□□□□ -0.71
UPF1-208ENST00000600012 TM2D1Q9BX74 207 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 DIABLOQ9NR28 239 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 ZNF581Q9P0T4 197 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 IL36RNQ9UBH0 155 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 ZDHHC8Q9ULC8 765 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 POLDIP2Q9Y2S7 368 aa10.59□□□□□ -0.71
UPF1-208ENST00000600012 TRAV18A0A075B6X5 111 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 TMEM89A2RUT3 159 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 RAB27BO00194 218 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 AKR7A2O43488 359 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 XRCC3O43542 346 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 PTBP3O95758 552 aaKnown RBP10.58□□□□□ -0.72
UPF1-208ENST00000600012 GTF2F2P13984 249 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 PRKACAP17612 351 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 GABRR1P24046 479 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 CCL8P80075 99 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 TAF9Q16594 264 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 MOGAT3Q86VF5 341 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 POC1AQ8NBT0 407 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 CHST4Q8NCG5 386 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 SGMS2Q8NHU3 365 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 ZNF665Q9H7R5 613 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 IL19Q9UHD0 177 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 ST3GAL6Q9Y274 331 aa10.58□□□□□ -0.72
UPF1-208ENST00000600012 LOC105371242A0A075B767 164 aa10.57□□□□□ -0.72
UPF1-208ENST00000600012 IGHV1-69-2A0A0G2JMI3 117 aa10.57□□□□□ -0.72
UPF1-208ENST00000600012 FOXI3A8MTJ6 420 aaPredicted RBP10.57□□□□□ -0.72
UPF1-208ENST00000600012 TPD52L2O43399 206 aaKnown RBP10.57□□□□□ -0.72
UPF1-208ENST00000600012 HLA-DQB1P01920 261 aa10.57□□□□□ -0.72
UPF1-208ENST00000600012 CD55P08174 381 aa10.57□□□□□ -0.72
UPF1-208ENST00000600012 ADH4P08319 380 aa10.57□□□□□ -0.72
UPF1-208ENST00000600012 EGR1P18146 543 aa10.57□□□□□ -0.72
UPF1-208ENST00000600012 CPT2P23786 658 aa10.57□□□□□ -0.72
UPF1-208ENST00000600012 PTBP1P26599 531 aaKnown RBP eCLIP10.57□□□□□ -0.72
UPF1-208ENST00000600012 PMELP40967 661 aa10.57□□□□□ -0.72
UPF1-208ENST00000600012 RBM11P57052 281 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms