RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 A0A1B0GX30 115 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 LEUTXA8MZ59 168 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 PIN1P1O15428 100 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 PSPNO60542 156 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 CIB2O75838 187 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 DUS4LO95620 317 aaKnown RBP10.93□□□□□ -0.66
TRIM28-211ENST00000597968 CD28P10747 220 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 ZNF20P17024 532 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 ATF1P18846 271 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 CD83Q01151 205 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 MRPL28Q13084 256 aaKnown RBP10.93□□□□□ -0.66
TRIM28-211ENST00000597968 EDDM3AQ14507 147 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 CCDC144NLQ6NUI1 221 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 TMEM219Q86XT9 240 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 OR52N4Q8NGI2 321 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 OR4P4Q8NGL7 312 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 OR2G2Q8NGZ5 317 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 CAPSLQ8WWF8 208 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 OPALINQ96PE5 141 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 CITED2Q99967 270 aaPredicted RBP10.93□□□□□ -0.66
TRIM28-211ENST00000597968 OCSTAMPQ9BR26 566 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 COMMD4Q9H0A8 199 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 NCOR1P1Q9H4R4 102 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 EXOSC4Q9NPD3 245 aaKnown RBP10.93□□□□□ -0.66
TRIM28-211ENST00000597968 PCDHB16Q9NRJ7 776 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 GNG8Q9UK08 70 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 HHLA2Q9UM44 414 aa10.93□□□□□ -0.66
TRIM28-211ENST00000597968 IGKV1-9A0A0C4DH69 117 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 ADARB2-AS1A8MUL3 147 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 KDM4BO94953 1096 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 IGLV1-47P01700 117 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 IGHA1P01876 353 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 OCM2P0CE71 109 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 OCMP0CE72 109 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-211ENST00000597968 PRKACAP17612 351 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 OR3A1P47881 315 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 NPBWR2P48146 333 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 LOXL3P58215 753 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 BLCAPP62952 87 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 ZNF85Q03923 595 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 NSUN5P1Q3KNT7 163 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 PLA1AQ53H76 456 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 Q6ZPA2 131 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 TRAPPC6BQ86SZ2 158 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 RDH10Q8IZV5 341 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 ABHD12Q8N2K0 398 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 HAVCR2Q8TDQ0 301 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 ADAT3Q96EY9 351 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-211ENST00000597968 CPNE2Q96FN4 548 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-211ENST00000597968 MMP28Q9H239 520 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 RBFOX1Q9NWB1 397 aaKnown RBP10.92□□□□□ -0.66
TRIM28-211ENST00000597968 IMPAD1Q9NX62 359 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 AASSQ9UDR5 926 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 HILPDAQ9Y5L2 63 aa10.92□□□□□ -0.66
TRIM28-211ENST00000597968 PLXNB1O43157 2135 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 H3BNX3 289 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 J3QRE1 110 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 SLC16A6O15403 523 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 OR2F2O95006 317 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 INMTO95050 263 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 OR2H2O95918 312 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 DBTP11182 482 aaKnown RBP10.91□□□□□ -0.66
TRIM28-211ENST00000597968 BCL3P20749 454 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 KIR3DL2P43630 455 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 POU3F4P49335 361 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 PRRX1P54821 245 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 SNRPGP62308 76 aaKnown RBP10.91□□□□□ -0.66
TRIM28-211ENST00000597968 HABP2Q14520 560 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-211ENST00000597968 KPNB1Q14974 876 aaKnown RBP10.91□□□□□ -0.66
TRIM28-211ENST00000597968 ZIK1Q3SY52 487 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-211ENST00000597968 OR5AU1Q8NGC0 362 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 STMN2Q93045 179 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 RNF166Q96A37 237 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-211ENST00000597968 FGGYQ96C11 551 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 HRASLS5Q96KN8 279 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 CHST6Q9GZX3 395 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 OR6C3Q9NZP0 311 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 FRRS1LQ9P0K9 344 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 ORC6Q9Y5N6 252 aa10.91□□□□□ -0.66
TRIM28-211ENST00000597968 TSSC4Q9Y5U2 329 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-211ENST00000597968 DAPL1A0PJW8 107 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 ZNF729A6NN14 1252 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-211ENST00000597968 HTR1AP08908 422 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 MNDAP41218 407 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 PTGFRP43088 359 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 PAX5Q02548 391 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 TP53I3Q53FA7 332 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 OXLD1Q5BKU9 147 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 CENPVQ7Z7K6 275 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-211ENST00000597968 THNSL2Q86YJ6 484 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 SYS1Q8N2H4 156 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 ACBD7Q8N6N7 88 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 TPRX1Q8N7U7 411 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 ZNF565Q8N9K5 539 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 OR4X2Q8NGF9 303 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 OR4D6Q8NGJ1 314 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 SGCDQ92629 289 aa10.9□□□□□ -0.66
TRIM28-211ENST00000597968 RBM14Q96PK6 669 aaKnown RBP10.9□□□□□ -0.66
TRIM28-211ENST00000597968 DNAH3Q8TD57 4116 aa10.9□□□□□ -0.67
TRIM28-211ENST00000597968 DSCAML1Q8TD84 2053 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms