RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 LPCAT4Q643R3 524 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 CCBE1Q6UXH8 406 aaPredicted RBP10.55□□□□□ -0.72
LIG1-212ENST00000596549 BAIAP2L2Q6UXY1 529 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 C10orf67Q8IYJ2 551 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 OR51A2Q8NGJ7 313 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 OR5AK2Q8NH90 309 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 CNIH3Q8TBE1 160 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 MRPL48Q96GC5 212 aaKnown RBP10.55□□□□□ -0.72
LIG1-212ENST00000596549 RDH12Q96NR8 316 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 NKX3-1Q99801 234 aaPredicted RBP10.55□□□□□ -0.72
LIG1-212ENST00000596549 EXOSC4Q9NPD3 245 aaKnown RBP10.55□□□□□ -0.72
LIG1-212ENST00000596549 RPL36Q9Y3U8 105 aaKnown RBP10.55□□□□□ -0.72
LIG1-212ENST00000596549 VWFP04275 2813 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 IGHV2-26A0A0B4J1V2 119 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 hADV38S2A0JD32 116 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 VGLL3A8MV65 326 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 GABRPO00591 440 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 MGST3O14880 152 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 HCKP08631 526 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 CCDC159P0C7I6 412 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 OCM2P0CE71 109 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 OCMP0CE72 109 aaPredicted RBP10.54□□□□□ -0.72
LIG1-212ENST00000596549 ERP29P30040 261 aaKnown RBP10.54□□□□□ -0.72
LIG1-212ENST00000596549 GDNFP39905 211 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 ETV1P50549 477 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 MRPL28Q13084 256 aaKnown RBP10.54□□□□□ -0.72
LIG1-212ENST00000596549 CDK5R1Q15078 307 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 OR2G6Q5TZ20 316 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 HIST2H2BDQ6DRA6 164 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 ZNF529Q6P280 563 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 Q6P435 159 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 SAXO1Q8IYX7 474 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 OR13D1Q8NGV5 346 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 TSEN15Q8WW01 171 aaKnown RBP10.54□□□□□ -0.72
LIG1-212ENST00000596549 COQ2Q96H96 371 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 RANBP3Q9H6Z4 567 aaPredicted RBP10.54□□□□□ -0.72
LIG1-212ENST00000596549 NEK6Q9HC98 313 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 FBLN5Q9UBX5 448 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 DHDHQ9UQ10 334 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 TCF19Q9Y242 345 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 SESN1Q9Y6P5 492 aa10.54□□□□□ -0.72
LIG1-212ENST00000596549 CMYA5Q8N3K9 4069 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 SLC33A1O00400 549 aaPredicted RBP10.53□□□□□ -0.72
LIG1-212ENST00000596549 TIMM23O14925 209 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 ALX3O95076 343 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 LALBAP00709 142 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 CSN2P05814 226 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 ZNF44P15621 663 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 LMO1P25800 156 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 GABRA5P31644 462 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 SOX2P48431 317 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 RAB13P51153 203 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 GBX2P52951 348 aaPredicted RBP10.53□□□□□ -0.72
LIG1-212ENST00000596549 LGALS4P56470 323 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 KISS1Q15726 138 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 SSX2Q16385 188 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 LRRC36Q1X8D7 754 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 KIAA2026Q5HYC2 2103 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 PRAMEF5Q5TYX0 476 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 LIAT1Q6ZQX7 453 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 SERPINA12Q8IW75 414 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 ZNF555Q8NEP9 628 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 STMN2Q93045 179 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 FOXRED1Q96CU9 486 aaPredicted RBP10.53□□□□□ -0.72
LIG1-212ENST00000596549 TMEM133Q9H2Q1 129 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 ZNF702PQ9H963 129 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 TCF7L1Q9HCS4 588 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 TAS2R4Q9NYW5 299 aa10.53□□□□□ -0.72
LIG1-212ENST00000596549 SIRT4Q9Y6E7 314 aaPredicted RBP10.53□□□□□ -0.72
LIG1-212ENST00000596549 A0A0G2JK05 382 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 FAM172BPA6NC97 362 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 M0QZ24 198 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 KIR2DS4P43632 304 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 GLIPR1P48060 266 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 AESQ08117 197 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 DYNC1I2Q13409 638 aaKnown RBP10.52□□□□□ -0.73
LIG1-212ENST00000596549 HABP2Q14520 560 aaPredicted RBP10.52□□□□□ -0.73
LIG1-212ENST00000596549 ATXN7L3Q14CW9 347 aaPredicted RBP10.52□□□□□ -0.73
LIG1-212ENST00000596549 FAM189A2Q15884 450 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 KLHL22Q53GT1 634 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 TRAPPC6BQ86SZ2 158 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 TMEM219Q86XT9 240 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 OR4P4Q8NGL7 312 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 OR4C13Q8NGP0 309 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 OR13C5Q8NGS8 318 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 MALSU1Q96EH3 234 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 MYCBPQ99417 103 aaPredicted RBP10.52□□□□□ -0.73
LIG1-212ENST00000596549 PPIL3Q9H2H8 161 aaKnown RBP10.52□□□□□ -0.73
LIG1-212ENST00000596549 MMP27Q9H306 513 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 RHOFQ9HBH0 211 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 FOXJ3Q9UPW0 622 aa10.52□□□□□ -0.73
LIG1-212ENST00000596549 UBE2J1Q9Y385 318 aaPredicted RBP10.52□□□□□ -0.73
LIG1-212ENST00000596549 A6NDX4 124 aa10.51□□□□□ -0.73
LIG1-212ENST00000596549 SH2D1BO14796 132 aa10.51□□□□□ -0.73
LIG1-212ENST00000596549 TMEM225BP0DP42 221 aa10.51□□□□□ -0.73
LIG1-212ENST00000596549 ADARB1P78563 741 aaKnown RBP10.51□□□□□ -0.73
LIG1-212ENST00000596549 DOC2BQ14184 412 aa10.51□□□□□ -0.73
LIG1-212ENST00000596549 RCN1Q15293 331 aa10.51□□□□□ -0.73
LIG1-212ENST00000596549 FBLN7Q53RD9 439 aa10.51□□□□□ -0.73
LIG1-212ENST00000596549 UTF1Q5T230 341 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms