RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FGL1Q08830 312 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 MZT1Q08AG7 82 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 IKZF1Q13422 519 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 DAZAP2Q15038 168 aaPredicted RBP12.1□□□□□ -0.47
LIG3-205ENST00000585941 ADAD2Q8NCV1 583 aaKnown RBP12.1□□□□□ -0.47
LIG3-205ENST00000585941 OR5M8Q8NGP6 311 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 C5orf66Q9H5L9 145 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 ZNF581Q9P0T4 197 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 HEATR1Q9H583 2144 aaKnown RBP12.1□□□□□ -0.47
LIG3-205ENST00000585941 OR5H14A6NHG9 310 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 HMSDA8MTL9 139 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 GLP1RP43220 463 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 C2orf68Q2NKX9 166 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 Q5BKY6 102 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 GFRALQ6UXV0 394 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 SSX8Q7RTT4 187 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 MRGPRGQ86SM5 289 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 DOLPP1Q86YN1 238 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 RPRMLQ8N4K4 120 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 SCCPDHQ8NBX0 429 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 CYYR1Q96J86 154 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 ZNF2Q9BSG1 426 aaPredicted RBP12.1□□□□□ -0.47
LIG3-205ENST00000585941 RTBDNQ9BSG5 229 aaPredicted RBP12.1□□□□□ -0.47
LIG3-205ENST00000585941 CHMP1AQ9HD42 196 aaPredicted RBP12.1□□□□□ -0.47
LIG3-205ENST00000585941 ZNF835Q9Y2P0 537 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 ASPMQ8IZT6 3477 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 MGAQ8IWI9 3026 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 A8MXE2 369 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 F8VVB4 439 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 F8VWA3 439 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 TIMM8AO60220 97 aaPredicted RBP12.09□□□□□ -0.47
LIG3-205ENST00000585941 ATP6V1G1O75348 118 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 SFT2D2O95562 160 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 NAPSAO96009 420 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 CD8AP01732 235 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 CTSDP07339 412 aaPredicted RBP12.09□□□□□ -0.47
LIG3-205ENST00000585941 PGAM2P15259 253 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 MPV17P39210 176 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 NAAAQ02083 359 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 RBPJQ06330 500 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 ZNF660Q6AZW8 331 aaPredicted RBP12.09□□□□□ -0.47
LIG3-205ENST00000585941 BRICD5Q6PL45 260 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 SLC22A25Q6T423 547 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 FIP1L1Q6UN15 594 aaKnown RBP12.09□□□□□ -0.47
LIG3-205ENST00000585941 ZNF767PQ75MW2 155 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 COQ8AQ8NI60 647 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 S100PBPQ96BU1 408 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 CXXC4Q9H2H0 198 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 ELOVL5Q9NYP7 299 aa12.09□□□□□ -0.47
LIG3-205ENST00000585941 MAP1BP46821 2468 aaKnown RBP12.09□□□□□ -0.47
LIG3-205ENST00000585941 PTPRQQ9UMZ3 2332 aa12.08□□□□□ -0.47
LIG3-205ENST00000585941 TRBV6-6A0A0A6YYG2 114 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 KIR2DS1A0A191URI9 304 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 PLSCR5A0PG75 271 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 H7C1Q1 480 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 NOS1APO75052 506 aaPredicted RBP12.08□□□□□ -0.48
LIG3-205ENST00000585941 SIX6O95475 246 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 CRYAAP02489 173 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 PGA5P0DJD9 388 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 NFYAP23511 347 aaPredicted RBP12.08□□□□□ -0.48
LIG3-205ENST00000585941 KIR2DS4P43632 304 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 ERVK11-1P61568 191 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 SNRPD2P62316 118 aaKnown RBP12.08□□□□□ -0.48
LIG3-205ENST00000585941 ZNF154Q13106 437 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 KIR2DS1Q14954 304 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 LY6G6FQ5SQ64 297 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 DCAF12L2Q5VW00 463 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 NEK7Q8TDX7 302 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 NRIP2Q9BQI9 281 aa12.08□□□□□ -0.48
LIG3-205ENST00000585941 A0A1B0GWJ7 208 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 DBX1A6NMT0 343 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 CTXN2P0C2S0 81 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 MDH2P40926 338 aaKnown RBP12.07□□□□□ -0.48
LIG3-205ENST00000585941 UCP3P55916 312 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 PDCD1Q15116 288 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 ALKBH6Q3KRA9 238 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 LGALSLQ3ZCW2 172 aaPredicted RBP12.07□□□□□ -0.48
LIG3-205ENST00000585941 SPIN3Q5JUX0 258 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 RGS7BPQ6MZT1 257 aaPredicted RBP12.07□□□□□ -0.48
LIG3-205ENST00000585941 WDR86Q86TI4 376 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 SUMF2Q8NBJ7 301 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 CASTOR1Q8WTX7 329 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 DYRK2Q92630 601 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 TMEM230Q96A57 120 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 PDCD10Q9BUL8 212 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 Q9N2K0 584 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 TREM2Q9NZC2 230 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 COMMD9Q9P000 198 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 ZGRF1Q86YA3 2104 aa12.07□□□□□ -0.48
LIG3-205ENST00000585941 FAM221AA4D161 298 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 DEGS1O15121 323 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 ZNF81P51508 661 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 ZNF83P51522 516 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 SEC61A1P61619 476 aaKnown RBP12.06□□□□□ -0.48
LIG3-205ENST00000585941 RPS23P62266 143 aaKnown RBP12.06□□□□□ -0.48
LIG3-205ENST00000585941 CYCSP99999 105 aaKnown RBP12.06□□□□□ -0.48
LIG3-205ENST00000585941 SHEQ5VZ18 495 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 CLEC18BQ6UXF7 455 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 BATF2Q8N1L9 274 aa12.06□□□□□ -0.48
LIG3-205ENST00000585941 SNRNP40Q96DI7 357 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms