RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SEH1LQ96EE3 360 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 PSMG3-AS1Q96PY0 264 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 OCSTAMPQ9BR26 566 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 MYOZ1Q9NP98 299 aaPredicted RBP12.84□□□□□ -0.35
SS18-215ENST00000580642 DNAJB11Q9UBS4 358 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 EDARQ9UNE0 448 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 KCNK7Q9Y2U2 307 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 WIPI2Q9Y4P8 454 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 IGHV3-64DA0A0J9YX35 117 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 OOEPA6NGQ2 149 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 OR2AT4A6NND4 320 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 F12P00748 615 aaPredicted RBP12.83□□□□□ -0.36
SS18-215ENST00000580642 HPXP02790 462 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 DTYMKP23919 212 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 INPP1P49441 399 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 DEFA1P59665 94 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 DEFA3P59666 94 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 MRPS15P82914 257 aaKnown RBP12.83□□□□□ -0.36
SS18-215ENST00000580642 BAK1Q16611 211 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 SPRNQ5BIV9 151 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 OR52I2Q8NH67 350 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 TRIM63Q969Q1 353 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 C7orf50Q9BRJ6 194 aaKnown RBP12.83□□□□□ -0.36
SS18-215ENST00000580642 ANAPC10Q9UM13 185 aa12.83□□□□□ -0.36
SS18-215ENST00000580642 PPIAL4EA0A075B759 164 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 TRBV6-6A0A0A6YYG2 114 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 TRAV24A0A0B4J272 114 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 A1L4Q6 167 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 TMEM235A6NFC5 223 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 PPIAL4DF5H284 164 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 OR2H2O95918 312 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 CSN2P05814 226 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 CSF1P09603 554 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 CD3GP09693 182 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 PPIAL4FP0DN26 164 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 PSG2P11465 335 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 ZNF44P15621 663 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 TBPP20226 339 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 PRDX2P32119 198 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 RCVRNP35243 200 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 EFNA4P52798 201 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 TMEM33P57088 247 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 DGCR2P98153 550 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 DYRK1AQ13627 763 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 ARFRP1Q13795 201 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 NKAPLQ5M9Q1 402 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 ATAD3CQ5T2N8 411 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 C6orf201Q7Z4U5 140 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 PEG10Q86TG7 708 aaKnown RBP12.82□□□□□ -0.36
SS18-215ENST00000580642 GAPTQ8N292 157 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 ZNF561Q8N587 486 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 SUMF2Q8NBJ7 301 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 ANGPTL6Q8NI99 470 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 CCL17Q92583 94 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 SDSLQ96GA7 329 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 DPCDQ9BVM2 203 aaPredicted RBP12.82□□□□□ -0.36
SS18-215ENST00000580642 FAM234AQ9H0X4 552 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 WDR13Q9H1Z4 485 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 NCOR1P1Q9H4R4 102 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 C12orf4Q9NQ89 552 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 MGAT4AQ9UM21 535 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 PPIAL4AQ9Y536 164 aa12.82□□□□□ -0.36
SS18-215ENST00000580642 SPTAN1Q13813 2472 aaKnown RBP12.82□□□□□ -0.36
SS18-215ENST00000580642 RAI1Q7Z5J4 1906 aaPredicted RBP12.82□□□□□ -0.36
SS18-215ENST00000580642 RFPL4AA6NLU0 287 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 RFPL4AL1F8VTS6 287 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 SLC33A1O00400 549 aaPredicted RBP12.81□□□□□ -0.36
SS18-215ENST00000580642 WNT9BO14905 357 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 ORC5O43913 435 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 RP2O75695 350 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 CYB5R3P00387 301 aaPredicted RBP12.81□□□□□ -0.36
SS18-215ENST00000580642 PAX1P15863 534 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 EGR1P18146 543 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 NAT1P18440 290 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 GDNFP39905 211 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 STEAP3Q658P3 488 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 STUMQ69YW2 141 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 Q6ZS49 121 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 LYSMD2Q8IV50 215 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 ZNF295-AS1Q8N0V1 137 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 TOMM5Q8N4H5 51 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 DTX3Q8N9I9 347 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 OR5D13Q8NGL4 314 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 SNX22Q96L94 193 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 CMSS1Q9BQ75 279 aaKnown RBP12.81□□□□□ -0.36
SS18-215ENST00000580642 SULT4A1Q9BR01 284 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 FAAP24Q9BTP7 215 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 BARX1Q9HBU1 254 aaPredicted RBP12.81□□□□□ -0.36
SS18-215ENST00000580642 ABCB10Q9NRK6 738 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 IL36RNQ9UBH0 155 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 ZNF222Q9UK12 451 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 ICE1Q9Y2F5 2266 aa12.81□□□□□ -0.36
SS18-215ENST00000580642 ARFGEF3Q5TH69 2177 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 PKDREJQ9NTG1 2253 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 IGKV1D-17A0A075B6S4 117 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 A0A1W2PQ09 198 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 ANKRD20A5PA0PJZ0 165 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 CENPXA8MT69 81 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 FAUP35544 74 aaKnown RBP12.8□□□□□ -0.36
SS18-215ENST00000580642 ASAH1Q13510 395 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms