RNA–Protein interactions for RNA: ENST00000579727.5

RARA-209, Transcript of retinoic acid receptor alpha, human

TSL 4

Gene RARA, Length 564 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RARA-209	ENST00000579727	ZNF418	Q8TF45	676 aa	Predicted RBP	13.43	□□□□□ -0.26
RARA-209	ENST00000579727	TMEM158	Q8WZ71	300 aa		13.43	□□□□□ -0.26
RARA-209	ENST00000579727	ZNF48	Q96MX3	618 aa	Predicted RBP	13.43	□□□□□ -0.26
RARA-209	ENST00000579727	KPTN	Q9Y664	436 aa		13.43	□□□□□ -0.26
RARA-209	ENST00000579727	TRBV23-1	A0A0A0MS06	115 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	GPX5	O75715	221 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	HTR3B	O95264	441 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	OR2H2	O95918	312 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	ZNF44	P15621	663 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	FPR2	P25090	351 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	PTGFR	P43088	359 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	ERVFRD-1	P60508	538 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	TBCE	Q15813	527 aa	Predicted RBP	13.42	□□□□□ -0.26
RARA-209	ENST00000579727	GRK1	Q15835	563 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	KRTAP24-1	Q3LI83	254 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	TMEM200B	Q69YZ2	307 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	GDPD3	Q7L5L3	318 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	OR8H2	Q8N162	312 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	KIR3DL3	Q8N743	410 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	MUL1	Q969V5	352 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	SNX22	Q96L94	193 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	MGLL	Q99685	303 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	SUCNR1	Q9BXA5	334 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	FAM234A	Q9H0X4	552 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	PPA2	Q9H2U2	334 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	ING3	Q9NXR8	418 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727	GLS2	Q9UI32	602 aa		13.42	□□□□□ -0.26
RARA-209	ENST00000579727		A0A1W2PP11	408 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	HSPB6	O14558	160 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	SERPINA2	P20848	420 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	MAPK3	P27361	379 aa	Predicted RBP	13.41	□□□□□ -0.26
RARA-209	ENST00000579727	OR3A1	P47881	315 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	GP2	P55259	537 aa	Known RBP	13.41	□□□□□ -0.26
RARA-209	ENST00000579727	GABARAPL2	P60520	117 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	MLLT11	Q13015	90 aa	Predicted RBP	13.41	□□□□□ -0.26
RARA-209	ENST00000579727	PIGY	Q3MUY2	71 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	METAP1D	Q6UB28	335 aa	Predicted RBP	13.41	□□□□□ -0.26
RARA-209	ENST00000579727	CEACAM19	Q7Z692	300 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	PNKD	Q8N490	385 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	MS4A15	Q8N5U1	240 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	PXT1	Q8NFP0	134 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	DUX5	Q96PT3	197 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	PPIL3	Q9H2H8	161 aa	Known RBP	13.41	□□□□□ -0.26
RARA-209	ENST00000579727	ACOT13	Q9NPJ3	140 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	ESM1	Q9NQ30	184 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	FOXJ3	Q9UPW0	622 aa		13.41	□□□□□ -0.26
RARA-209	ENST00000579727	DSCAML1	Q8TD84	2053 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	RNASEK-C17orf49	H0YIS7	233 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	SH2D1B	O14796	132 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	MTNR1B	P49286	362 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	HILS1	P60008	231 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	EMX1	Q04741	257 aa	Predicted RBP	13.4	□□□□□ -0.26
RARA-209	ENST00000579727	DEFB112	Q30KQ8	113 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727		Q6P435	159 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	UNQ9370/PRO34162	Q6UXP9	181 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	ZNF367	Q7RTV3	350 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	S100A13	Q99584	98 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	METTL9	Q9H1A3	318 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	ZNF581	Q9P0T4	197 aa		13.4	□□□□□ -0.26
RARA-209	ENST00000579727	MRPS28	Q9Y2Q9	187 aa	Known RBP	13.4	□□□□□ -0.26
RARA-209	ENST00000579727	IGHV1-69D	A0A0B4J2H0	117 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	DEGS1	O15121	323 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	IGHV1-69	P01742	117 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	CPE	P16870	476 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	TPBG	Q13641	420 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	BLMH	Q13867	455 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	ATXN7L3	Q14CW9	347 aa	Predicted RBP	13.39	□□□□□ -0.27
RARA-209	ENST00000579727	ZNF782	Q6ZMW2	699 aa	Predicted RBP	13.39	□□□□□ -0.27
RARA-209	ENST00000579727	TCF23	Q7RTU1	214 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	OR4D6	Q8NGJ1	314 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	THRSP	Q92748	146 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	RHOF	Q9HBH0	211 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	TCF7L1	Q9HCS4	588 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727	ISYNA1	Q9NPH2	558 aa		13.39	□□□□□ -0.27
RARA-209	ENST00000579727		A0A0G2JK05	382 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727		M0R1W7	72 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	SLC33A1	O00400	549 aa	Predicted RBP	13.38	□□□□□ -0.27
RARA-209	ENST00000579727	RRP9	O43818	475 aa	Known RBP	13.38	□□□□□ -0.27
RARA-209	ENST00000579727	SC5D	O75845	299 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	CSTB	P04080	98 aa	Known RBP	13.38	□□□□□ -0.27
RARA-209	ENST00000579727	FABP5	Q01469	135 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	GPR50	Q13585	617 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	SSX1	Q16384	188 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	SLC22A6	Q4U2R8	563 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	HSD17B12	Q53GQ0	312 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	AWAT2	Q6E213	333 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	ELP2	Q6IA86	826 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	GLIPR1L1	Q6UWM5	242 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	ASCL4	Q6XD76	172 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	RBMS3	Q6XE24	437 aa	Known RBP	13.38	□□□□□ -0.27
RARA-209	ENST00000579727	TMEM91	Q6ZNR0	172 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	C9orf139	Q6ZV77	190 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	LRRTM1	Q86UE6	522 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	OSR2	Q8N2R0	312 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	ZDHHC22	Q8N966	263 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	TNFRSF14	Q92956	283 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	SEBOX	Q9HB31	216 aa	Predicted RBP	13.38	□□□□□ -0.27
RARA-209	ENST00000579727	TNFRSF19	Q9NS68	423 aa		13.38	□□□□□ -0.27
RARA-209	ENST00000579727	SF3B6	Q9Y3B4	125 aa	Known RBP	13.38	□□□□□ -0.27
RARA-209	ENST00000579727		A0A0U1RQK1	487 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms