RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 INAFM2P0DMQ5 153 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 MADCAM1Q13477 382 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 KPNB1Q14974 876 aaKnown RBP12.18□□□□□ -0.46
VPS53-218ENST00000575207 CYBRD1Q53TN4 286 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 TMEM217Q8N7C4 229 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 OR52N4Q8NGI2 321 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 S1PR3Q99500 378 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 TMEM120AQ9BXJ8 343 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 ETAA1Q9NY74 926 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 APLNQ9ULZ1 77 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 SLC7A11Q9UPY5 501 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 UNC119BA6NIH7 251 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 ZNF593O00488 134 aaPredicted RBP12.17□□□□□ -0.46
VPS53-218ENST00000575207 IGHA1P01876 353 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 GABRR1P24046 479 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 ERP29P30040 261 aaKnown RBP12.17□□□□□ -0.46
VPS53-218ENST00000575207 BMI1P35226 326 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 GZMMP51124 257 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 P2RX3P56373 397 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 LAX1Q8IWV1 398 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 IZUMO1Q8IYV9 350 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 MNS1Q8NEH6 495 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 OR4D6Q8NGJ1 314 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 TSPEARQ8WU66 669 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 ZNRF4Q8WWF5 429 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 CORO2AQ92828 525 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 WFDC10AQ9H1F0 79 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 NIPAL2Q9H841 368 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 TAS2R3Q9NYW6 316 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 OR6C3Q9NZP0 311 aa12.17□□□□□ -0.46
VPS53-218ENST00000575207 FLG2Q5D862 2391 aaPredicted RBP12.16□□□□□ -0.46
VPS53-218ENST00000575207 OR11H12B2RN74 326 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 CD7P09564 240 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 SLC6A6P31641 620 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 MAP2K3P46734 347 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 TEX30Q5JUR7 227 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 LCN1P1Q5VSP4 162 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 FAM86B1Q8N7N1 296 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 MINDY2Q8NBR6 621 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 OR51L1Q8NGJ5 315 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 OR2T10Q8NGZ9 312 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 TINAGL1Q9GZM7 467 aaPredicted RBP12.16□□□□□ -0.46
VPS53-218ENST00000575207 SLC2A8Q9NY64 477 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 CD300AQ9UGN4 299 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 TP53TG1Q9Y2A0 90 aa12.16□□□□□ -0.46
VPS53-218ENST00000575207 DLGAP1O14490 977 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 MGST3O14880 152 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 MPZP25189 248 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 OMPP47874 163 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 LRRC23Q53EV4 343 aaPredicted RBP12.15□□□□□ -0.46
VPS53-218ENST00000575207 TMEM177Q53S58 311 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 SLX4IPQ5VYV7 408 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 OR8H1Q8NGG4 311 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 OR2T4Q8NH00 348 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 FANK1Q8TC84 345 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 C2CD4CQ8TF44 421 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 RNF133Q8WVZ7 376 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 IFT27Q9BW83 186 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 ANKRD19PQ9H560 264 aa12.15□□□□□ -0.46
VPS53-218ENST00000575207 IGHV3-72A0A0B4J1Y9 119 aa12.14□□□□□ -0.47
VPS53-218ENST00000575207 J3QR06 171 aa12.14□□□□□ -0.47
VPS53-218ENST00000575207 NFYBP25208 207 aa12.14□□□□□ -0.47
VPS53-218ENST00000575207 PTGFRP43088 359 aa12.14□□□□□ -0.47
VPS53-218ENST00000575207 MECP2P51608 486 aaKnown RBP12.14□□□□□ -0.47
VPS53-218ENST00000575207 AGKQ53H12 422 aa12.14□□□□□ -0.47
VPS53-218ENST00000575207 ZNF684Q5T5D7 378 aa12.14□□□□□ -0.47
VPS53-218ENST00000575207 OR9G4Q8NGQ1 327 aa12.14□□□□□ -0.47
VPS53-218ENST00000575207 SEBOXQ9HB31 216 aaPredicted RBP12.14□□□□□ -0.47
VPS53-218ENST00000575207 ZNF107Q9UII5 783 aaPredicted RBP12.14□□□□□ -0.47
VPS53-218ENST00000575207 ENPP5Q9UJA9 477 aa12.14□□□□□ -0.47
VPS53-218ENST00000575207 SNNO75324 88 aaPredicted RBP12.13□□□□□ -0.47
VPS53-218ENST00000575207 FMO3P31513 532 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 OPRL1P41146 370 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 NPBWR2P48146 333 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 SELENOWP63302 87 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 MOB3BQ86TA1 216 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 RNF148Q8N7C7 305 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 ZNF511Q8NB15 262 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 OR2K2Q8NGT1 345 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 HAVCR2Q8TDQ0 301 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 GGTLC1Q9BX51 225 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 OR52D1Q9H346 318 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 SLC25A19Q9HC21 320 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 COPS3Q9UNS2 423 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 U3KQV3 271 aa12.13□□□□□ -0.47
VPS53-218ENST00000575207 TRAV41A0A0B4J266 112 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 EPM2AB3EWF7 344 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 F8VVB4 439 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 F8VWA3 439 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 IDH3BO43837 385 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 HAND1O96004 215 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 IFNA4P05014 189 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 ZNF816Q0VGE8 651 aaPredicted RBP12.12□□□□□ -0.47
VPS53-218ENST00000575207 KLF5Q13887 457 aaPredicted RBP12.12□□□□□ -0.47
VPS53-218ENST00000575207 SLC35F1Q5T1Q4 408 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 OR8B12Q8NGG6 310 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 C18orf15Q96N68 181 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 ABHD6Q9BV23 337 aa12.12□□□□□ -0.47
VPS53-218ENST00000575207 IGHV1-3A0A0C4DH29 117 aa12.11□□□□□ -0.47
VPS53-218ENST00000575207 PQLC2LA1A4F0 135 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms