RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 LHX6Q9UPM6 363 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 AGPAT2O15120 278 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 DUSP1P28562 367 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 GLP1RP43220 463 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 ARF1P84077 181 aaKnown RBP19.62■□□□□ 0.73
VPS53-211ENST00000571805 PRELID3BQ9Y3B1 194 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 GPR137BO60478 399 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 OR8U9P0C7N5 309 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 PVALBP20472 110 aaPredicted RBP19.62■□□□□ 0.73
VPS53-211ENST00000571805 IGSF11Q5DX21 431 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 GPR157Q5UAW9 335 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 OR8U1Q8NH10 309 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 TP53RKQ96S44 253 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 REPIN1Q9BWE0 567 aaKnown RBP19.62■□□□□ 0.73
VPS53-211ENST00000571805 LINC00470Q9BZP3 86 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 FGF23Q9GZV9 251 aaPredicted RBP19.62■□□□□ 0.73
VPS53-211ENST00000571805 BOKQ9UMX3 212 aaPredicted RBP19.62■□□□□ 0.73
VPS53-211ENST00000571805 POMT1Q9Y6A1 747 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 FREM1Q5H8C1 2179 aa19.62■□□□□ 0.73
VPS53-211ENST00000571805 PQLC2LA1A4F0 135 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 PPYP01298 95 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 CD80P33681 288 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 CRIM1Q9NZV1 1036 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 RPL36A-HNRNPH2H7BZ11 118 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 PHF1O43189 567 aaPredicted RBP19.61■□□□□ 0.73
VPS53-211ENST00000571805 NFYBP25208 207 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 HERV-K104P61576 105 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 TMEM105Q8N8V8 129 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 CCDC71LQ8N9Z2 235 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 OR56B2PQ8NGI1 322 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 OR10Z1Q8NGY1 313 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 THOC3Q96J01 351 aaKnown RBP19.61■□□□□ 0.73
VPS53-211ENST00000571805 SPRY4Q9C004 299 aa19.61■□□□□ 0.73
VPS53-211ENST00000571805 LINC01387J3KSC0 135 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 NEURL1O76050 574 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 HEXAP06865 529 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 P2RY1P47900 373 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 LHX2P50458 406 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 DVL1P1P54792 670 aaPredicted RBP19.6■□□□□ 0.73
VPS53-211ENST00000571805 IL13RA2Q14627 380 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 FBXW12Q6X9E4 464 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 Q6ZS49 121 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 DMBX1Q8NFW5 382 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 GINS3Q9BRX5 216 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 FAM212BQ9NTI7 297 aaPredicted RBP19.6■□□□□ 0.73
VPS53-211ENST00000571805 ZFP57Q9NU63 452 aa19.6■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A10PA6NDY2 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A18PA6NE21 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A16PA6NEW6 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A20PA6NIJ5 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A8PA6NJQ4 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A7PA6NKC0 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A22PA8MWA6 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A12PA8MX19 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A5PA8MXJ8 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A23PA8MXZ1 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 ZNHIT1O43257 154 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 CELA3AP09093 270 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A15PP0C7V4 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 SEC11BP0C7V7 166 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A13PP0C7W8 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A14PP0C7W9 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 FAM90A24PP0C7X0 464 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 BCL3P20749 454 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 RFC3P40938 356 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 NOVA1P51513 510 aaKnown RBP19.59■□□□□ 0.73
VPS53-211ENST00000571805 OR2M7Q8NG81 312 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 EXTL1Q92935 676 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 PARP12Q9H0J9 701 aaKnown RBP19.59■□□□□ 0.73
VPS53-211ENST00000571805 TMED3Q9Y3Q3 217 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 A0A096LPE4 126 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 A0A1W2PPZ6 126 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 MPPED1O15442 326 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 ST8SIA3O43173 380 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 SRYQ05066 204 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 SWI5Q1ZZU3 235 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 C9orf135Q5VTT2 229 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 C1orf210Q8IVY1 113 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 SLC35G3Q8N808 338 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 OR4D5Q8NGN0 318 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 KIRREL1Q96J84 757 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 SIGLEC12Q96PQ1 595 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 HS3ST6Q96QI5 342 aa19.59■□□□□ 0.73
VPS53-211ENST00000571805 PAPOLGQ9BWT3 736 aaKnown RBP19.59■□□□□ 0.73
VPS53-211ENST00000571805 ZNF703Q9H7S9 590 aaPredicted RBP19.59■□□□□ 0.73
VPS53-211ENST00000571805 FBXO9Q9UK97 447 aaPredicted RBP19.59■□□□□ 0.73
VPS53-211ENST00000571805 GLAP06280 429 aa19.58■□□□□ 0.73
VPS53-211ENST00000571805 DANCRP0C864 163 aa19.58■□□□□ 0.73
VPS53-211ENST00000571805 FOXG1P55316 489 aaPredicted RBP19.58■□□□□ 0.73
VPS53-211ENST00000571805 CLDN18P56856 261 aa19.58■□□□□ 0.73
VPS53-211ENST00000571805 PRDX4Q13162 271 aa19.58■□□□□ 0.73
VPS53-211ENST00000571805 C5orf24Q7Z6I8 188 aa19.58■□□□□ 0.73
VPS53-211ENST00000571805 FAM173AQ9BQD7 235 aa19.58■□□□□ 0.73
VPS53-211ENST00000571805 PRRG4Q9BZD6 226 aa19.58■□□□□ 0.73
VPS53-211ENST00000571805 COL6A3P12111 3177 aa19.58■□□□□ 0.73
VPS53-211ENST00000571805 C3orf85A0A1B0GTC6 90 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 SPP1P10451 314 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 CCL2P13500 99 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 GNRHRP30968 328 aa19.58■□□□□ 0.72
VPS53-211ENST00000571805 FAM76BQ5HYJ3 339 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms