RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 HDGFL3Q9Y3E1 203 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 CEP250Q9BV73 2442 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 CFAP54Q96N23 3096 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 A0A1W2PR80 420 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 H3BQ15 152 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 HEXAP06865 529 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 SEC11BP0C7V7 166 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 CCL3P10147 92 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 DEFA6Q01524 100 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 ZNF266Q14584 549 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 ZNF429Q86V71 674 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 TP53RKQ96S44 253 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 PRO1933Q9H354 126 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 PRRC2CQ9Y520 2896 aaKnown RBP12.6□□□□□ -0.39
VPS35-210ENST00000568784 RBFOX3A6NFN3 312 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 CXCL13O43927 109 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 CFIP05156 583 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 EIF1P41567 113 aaKnown RBP12.6□□□□□ -0.39
VPS35-210ENST00000568784 ECI1P42126 302 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 ZNF154Q13106 437 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 CYB561D1Q8N8Q1 229 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 Q96M66 194 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 PNRC2Q9NPJ4 139 aaKnown RBP12.6□□□□□ -0.39
VPS35-210ENST00000568784 HMGB3O15347 200 aaKnown RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 TCN2P20062 427 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 FGF8P55075 233 aaPredicted RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 TMEM187Q14656 261 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 USF2Q15853 346 aaPredicted RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 DPPA2Q7Z7J5 298 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 NECAP1Q8NC96 275 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 RAB39BQ96DA2 213 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 SUCNR1Q9BXA5 334 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 FBLN5Q9UBX5 448 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 WSB1Q9Y6I7 421 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 GPR179Q6PRD1 2367 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 ICE1Q9Y2F5 2266 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 C3orf80F5H4A9 247 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 RBMXL2O75526 392 aaKnown RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 KLK3P07288 261 aaPredicted RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 ZNF239Q16600 458 aaKnown RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 RDH5Q92781 318 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 KCNS2Q9ULS6 477 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 POMT1Q9Y6A1 747 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 FER1L5A0AVI2 2057 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 TRAV39A0A0B4J263 110 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 C3orf85A0A1B0GTC6 90 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 A0A1W2PNV4 684 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 IFNA5P01569 189 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 IAPPP10997 89 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 LTBRP36941 435 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 DYNLT3P51808 116 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 ENDOGQ14249 297 aaKnown RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 STRAPQ9Y3F4 350 aaKnown RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 HS3ST1O14792 307 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 DLK1P80370 383 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 TMEM267Q0VDI3 215 aaPredicted RBP12.59□□□□□ -0.39
VPS35-210ENST00000568784 CEACAM16Q2WEN9 425 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 FAM89BQ8N5H3 189 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 SCGB1C1Q8TD33 95 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 SLC7A10Q9NS82 523 aa12.59□□□□□ -0.39
VPS35-210ENST00000568784 PPP1R2P9O14990 202 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 OR8U8P0C7N1 319 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 ELLP55199 621 aaPredicted RBP12.58□□□□□ -0.4
VPS35-210ENST00000568784 CCL7P80098 99 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 RHOVQ96L33 236 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 TMPRSS5Q9H3S3 457 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 TERTO14746 1132 aaKnown RBP12.58□□□□□ -0.4
VPS35-210ENST00000568784 PPYP01298 95 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 SERPINE2P07093 398 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 OTX2P32243 289 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 NPBWR2P48146 333 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 SPIN2AQ99865 258 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 SPIN2BQ9BPZ2 258 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 NUDT16L1Q9BRJ7 211 aaKnown RBP12.58□□□□□ -0.4
VPS35-210ENST00000568784 UNKLQ9H9P5 680 aaKnown RBP12.58□□□□□ -0.4
VPS35-210ENST00000568784 GAR1Q9NY12 217 aaKnown RBP12.58□□□□□ -0.4
VPS35-210ENST00000568784 FABP4P15090 132 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 RPS16P62249 146 aaKnown RBP12.58□□□□□ -0.4
VPS35-210ENST00000568784 RPS23P62266 143 aaKnown RBP12.58□□□□□ -0.4
VPS35-210ENST00000568784 TBC1D26Q86UD7 250 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 ZNF611Q8N823 705 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 SLC25A31Q9H0C2 315 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 UCK1Q9HA47 277 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 NUP210LQ5VU65 1888 aa12.58□□□□□ -0.4
VPS35-210ENST00000568784 TGIF2-C20orf24A0A0A6YYL0 155 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 NDUFS6O75380 124 aaKnown RBP12.57□□□□□ -0.4
VPS35-210ENST00000568784 HAAOP46952 286 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 RND3P61587 244 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 HIST2H3PS2Q5TEC6 136 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 OR2T2Q6IF00 324 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 VASH2Q86V25 355 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 NFAM1Q8NET5 270 aaPredicted RBP12.57□□□□□ -0.4
VPS35-210ENST00000568784 OR1F12Q8NHA8 337 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 EXTL1Q92935 676 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 A0A0J9YW62 118 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 LSM6P62312 80 aaKnown RBP12.57□□□□□ -0.4
VPS35-210ENST00000568784 MPV17LQ2QL34 196 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 NSUN5P2Q63ZY6 315 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 MYPOPQ86VE0 399 aaPredicted RBP12.57□□□□□ -0.4
VPS35-210ENST00000568784 GAPTQ8N292 157 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms