RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NDUFA11Q86Y39 141 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 SPSB1Q96BD6 273 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 RNFT2Q96EX2 444 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 OPALINQ96PE5 141 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 OR5M11Q96RB7 305 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 CITED2Q99967 270 aaPredicted RBP12.91□□□□□ -0.34
CLN3-229ENST00000567963 MMP28Q9H239 520 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 GSTK1Q9Y2Q3 226 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 IGKV1-12A0A0C4DH73 117 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 SIRPB1O00241 398 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 SLC16A6O15403 523 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 OR2H2O95918 312 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 IGKV1D-12P01611 117 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 ALPLP05186 524 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 HTR1AP08908 422 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 LMO1P25800 156 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 HTR1DP28221 377 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 P2RX3P56373 397 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 ABHD12Q8N2K0 398 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 OR51A4Q8NGJ6 313 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 OR4P4Q8NGL7 312 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 RFT1Q96AA3 541 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 EXOSC4Q9NPD3 245 aaKnown RBP12.91□□□□□ -0.34
CLN3-229ENST00000567963 HHLA2Q9UM44 414 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 KIAA2026Q5HYC2 2103 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 ADARB2-AS1A8MUL3 147 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 H3BUI4 141 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 XPNPEP2O43895 674 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 CIB2O75838 187 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 KDM4BO94953 1096 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 MT-ND2P03891 347 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 OCM2P0CE71 109 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 OCMP0CE72 109 aaPredicted RBP12.9□□□□□ -0.34
CLN3-229ENST00000567963 SNRPGP62308 76 aaKnown RBP12.9□□□□□ -0.34
CLN3-229ENST00000567963 IL18R1Q13478 541 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 FBLN7Q53RD9 439 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 ARSJQ5FYB0 599 aaPredicted RBP12.9□□□□□ -0.34
CLN3-229ENST00000567963 MEDAGQ5VYS4 303 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 OR52W1Q6IF63 320 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 RNF144BQ7Z419 303 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 OR10AC1Q8NH08 325 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 PYDC1Q8WXC3 89 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 CORO2AQ92828 525 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 R3HDM4Q96D70 268 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 OCSTAMPQ9BR26 566 aa12.9□□□□□ -0.34
CLN3-229ENST00000567963 TRGV10A0A0A0MS01 117 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 E9PQ18 207 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 J3QLW9 94 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 PRB2P02812 416 aaPredicted RBP12.89□□□□□ -0.35
CLN3-229ENST00000567963 ZNF19P17023 458 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 VDAC2P45880 294 aaPredicted RBP12.89□□□□□ -0.35
CLN3-229ENST00000567963 AESQ08117 197 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 OXLD1Q5BKU9 147 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 BAIAP2L2Q6UXY1 529 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 HEPN1Q6WQI6 88 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 RTN4RL2Q86UN3 420 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 ACBD7Q8N6N7 88 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 OR4F17Q8NGA8 305 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 OR13C3Q8NGS6 347 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 PELI1Q96FA3 418 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 SPACA5Q96QH8 159 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 OR4F4Q96R69 305 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 COMMD4Q9H0A8 199 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 GAL3ST2Q9H3Q3 398 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 RHOFQ9HBH0 211 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 TAS2R3Q9NYW6 316 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 DPM3Q9P2X0 92 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 EXOGQ9Y2C4 368 aaKnown RBP12.89□□□□□ -0.35
CLN3-229ENST00000567963 ORC6Q9Y5N6 252 aa12.89□□□□□ -0.35
CLN3-229ENST00000567963 FUOMA2VDF0 154 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 OR4C45A6NMZ5 311 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 EI24O14681 340 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 ALDOBP05062 364 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 CDK2P24941 298 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 GLIPR1P48060 266 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 BDH1Q02338 343 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 ALKBH1Q13686 389 aaKnown RBP12.88□□□□□ -0.35
CLN3-229ENST00000567963 TMEM95Q3KNT9 176 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 ZIK1Q3SY52 487 aaPredicted RBP12.88□□□□□ -0.35
CLN3-229ENST00000567963 PRAMEF5Q5TYX0 476 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 REC114Q7Z4M0 266 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 SAXO1Q8IYX7 474 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 OR5D18Q8NGL1 313 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 OR13C9Q8NGT0 318 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 ZNF596Q8TC21 504 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 C4orf36Q96KX1 117 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 PCDHGB5Q9Y5G0 923 aa12.88□□□□□ -0.35
CLN3-229ENST00000567963 SNTNA6NMZ2 147 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 IGLV1-47P01700 117 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 CSN2P05814 226 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 CD24P25063 80 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 ALDH3A2P51648 485 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 SCN1BQ07699 218 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 KPNB1Q14974 876 aaKnown RBP12.87□□□□□ -0.35
CLN3-229ENST00000567963 Q6P435 159 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 C16orf82Q7Z2V1 217 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 STMN2Q93045 179 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 ZCCHC4Q9H5U6 513 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 AASSQ9UDR5 926 aa12.87□□□□□ -0.35
CLN3-229ENST00000567963 NOTCH3Q9UM47 2321 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms