RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SLC16A6O15403 523 aa15.05■□□□□ -0
CLN3-218ENST00000565688 VDAC2P45880 294 aaPredicted RBP15.05■□□□□ -0
CLN3-218ENST00000565688 OR3A1P47881 315 aa15.05■□□□□ -0
CLN3-218ENST00000565688 SLC25A30Q5SVS4 291 aa15.05■□□□□ -0
CLN3-218ENST00000565688 RTN4RL2Q86UN3 420 aa15.05■□□□□ -0
CLN3-218ENST00000565688 LYG1Q8N1E2 194 aa15.05■□□□□ -0
CLN3-218ENST00000565688 AKR1E2Q96JD6 320 aa15.05■□□□□ -0
CLN3-218ENST00000565688 OPALINQ96PE5 141 aa15.05■□□□□ -0
CLN3-218ENST00000565688 RHOFQ9HBH0 211 aa15.05■□□□□ -0
CLN3-218ENST00000565688 EXOSC4Q9NPD3 245 aaKnown RBP15.05■□□□□ -0
CLN3-218ENST00000565688 ORC6Q9Y5N6 252 aa15.05■□□□□ -0
CLN3-218ENST00000565688 NOTCH3Q9UM47 2321 aa15.05■□□□□ -0
CLN3-218ENST00000565688 TRGV10A0A0A0MS01 117 aa15.04■□□□□ -0
CLN3-218ENST00000565688 SAC3D1A6NKF1 404 aa15.04■□□□□ -0
CLN3-218ENST00000565688 CIB2O75838 187 aa15.04■□□□□ -0
CLN3-218ENST00000565688 MT-ND2P03891 347 aa15.04■□□□□ -0
CLN3-218ENST00000565688 CCR9P51686 369 aa15.04■□□□□ -0
CLN3-218ENST00000565688 ARHGDIBP52566 201 aa15.04■□□□□ -0
CLN3-218ENST00000565688 BLCAPP62952 87 aa15.04■□□□□ -0
CLN3-218ENST00000565688 MEDAGQ5VYS4 303 aa15.04■□□□□ -0
CLN3-218ENST00000565688 C16orf82Q7Z2V1 217 aa15.04■□□□□ -0
CLN3-218ENST00000565688 R3HDM4Q96D70 268 aa15.04■□□□□ -0
CLN3-218ENST00000565688 RNFT2Q96EX2 444 aa15.04■□□□□ -0
CLN3-218ENST00000565688 OR5M11Q96RB7 305 aa15.04■□□□□ -0
CLN3-218ENST00000565688 MYCBPQ99417 103 aaPredicted RBP15.04■□□□□ -0
CLN3-218ENST00000565688 CITED2Q99967 270 aaPredicted RBP15.04■□□□□ -0
CLN3-218ENST00000565688 MMP28Q9H239 520 aa15.04■□□□□ -0
CLN3-218ENST00000565688 NEK6Q9HC98 313 aa15.04■□□□□ -0
CLN3-218ENST00000565688 HHLA2Q9UM44 414 aa15.04■□□□□ -0
CLN3-218ENST00000565688 SNTNA6NMZ2 147 aa15.03■□□□□ -0
CLN3-218ENST00000565688 J3QRE1 110 aa15.03■□□□□ -0
CLN3-218ENST00000565688 SIRPB1O00241 398 aa15.03■□□□□ -0
CLN3-218ENST00000565688 OR2H2O95918 312 aa15.03■□□□□ -0
CLN3-218ENST00000565688 RPSAP08865 295 aaKnown RBP15.03■□□□□ -0
CLN3-218ENST00000565688 HTR1AP08908 422 aa15.03■□□□□ -0
CLN3-218ENST00000565688 BRS3P32247 399 aa15.03■□□□□ -0
CLN3-218ENST00000565688 SNU13P55769 128 aaKnown RBP15.03■□□□□ -0
CLN3-218ENST00000565688 SNRPGP62308 76 aaKnown RBP15.03■□□□□ -0
CLN3-218ENST00000565688 BDH1Q02338 343 aa15.03■□□□□ -0
CLN3-218ENST00000565688 HEPN1Q6WQI6 88 aa15.03■□□□□ -0
CLN3-218ENST00000565688 SAXO1Q8IYX7 474 aa15.03■□□□□ -0
CLN3-218ENST00000565688 ABHD12Q8N2K0 398 aa15.03■□□□□ -0
CLN3-218ENST00000565688 OR4P4Q8NGL7 312 aa15.03■□□□□ -0
CLN3-218ENST00000565688 OR13C3Q8NGS6 347 aa15.03■□□□□ -0
CLN3-218ENST00000565688 ZNF596Q8TC21 504 aa15.03■□□□□ -0
CLN3-218ENST00000565688 CORO2AQ92828 525 aa15.03■□□□□ -0
CLN3-218ENST00000565688 MRPL48Q96GC5 212 aaKnown RBP15.03■□□□□ -0
CLN3-218ENST00000565688 HRASLS5Q96KN8 279 aa15.03■□□□□ -0
CLN3-218ENST00000565688 TAS2R3Q9NYW6 316 aa15.03■□□□□ -0
CLN3-218ENST00000565688 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.03■□□□□ -0
CLN3-218ENST00000565688 DPM3Q9P2X0 92 aa15.03■□□□□ -0
CLN3-218ENST00000565688 GSTK1Q9Y2Q3 226 aa15.03■□□□□ -0
CLN3-218ENST00000565688 ADARB2-AS1A8MUL3 147 aa15.02■□□□□ -0
CLN3-218ENST00000565688 KDM4BO94953 1096 aa15.02■□□□□ -0
CLN3-218ENST00000565688 ALPLP05186 524 aa15.02■□□□□ -0
CLN3-218ENST00000565688 CALCBP10092 127 aa15.02■□□□□ -0
CLN3-218ENST00000565688 JUNBP17275 347 aaPredicted RBP15.02■□□□□ -0
CLN3-218ENST00000565688 LMO1P25800 156 aa15.02■□□□□ -0
CLN3-218ENST00000565688 NANOS3P60323 173 aaKnown RBP15.02■□□□□ -0
CLN3-218ENST00000565688 Q6ZS46 218 aa15.02■□□□□ -0
CLN3-218ENST00000565688 ACBD7Q8N6N7 88 aa15.02■□□□□ -0
CLN3-218ENST00000565688 CHST4Q8NCG5 386 aa15.02■□□□□ -0
CLN3-218ENST00000565688 CAPSLQ8WWF8 208 aa15.02■□□□□ -0
CLN3-218ENST00000565688 CREB3L1Q96BA8 519 aa15.02■□□□□ -0
CLN3-218ENST00000565688 COMMD4Q9H0A8 199 aa15.02■□□□□ -0
CLN3-218ENST00000565688 LIN7BQ9HAP6 207 aa15.02■□□□□ -0
CLN3-218ENST00000565688 LEUTXA8MZ59 168 aa15.01□□□□□ -0.01
CLN3-218ENST00000565688 MMP23AO75900 390 aa15.01□□□□□ -0.01
CLN3-218ENST00000565688 CSN2P05814 226 aa15.01□□□□□ -0.01
CLN3-218ENST00000565688 CDK2P24941 298 aa15.01□□□□□ -0.01
CLN3-218ENST00000565688 KPNB1Q14974 876 aaKnown RBP15.01□□□□□ -0.01
CLN3-218ENST00000565688 PRAMEF5Q5TYX0 476 aa15.01□□□□□ -0.01
CLN3-218ENST00000565688 RFT1Q96AA3 541 aa15.01□□□□□ -0.01
CLN3-218ENST00000565688 OCSTAMPQ9BR26 566 aa15.01□□□□□ -0.01
CLN3-218ENST00000565688 IGKV1-12A0A0C4DH73 117 aa15□□□□□ -0.01
CLN3-218ENST00000565688 OR4C45A6NMZ5 311 aa15□□□□□ -0.01
CLN3-218ENST00000565688 J3QLW9 94 aa15□□□□□ -0.01
CLN3-218ENST00000565688 IGKV1D-12P01611 117 aa15□□□□□ -0.01
CLN3-218ENST00000565688 ZNF44P15621 663 aa15□□□□□ -0.01
CLN3-218ENST00000565688 ZNF19P17023 458 aa15□□□□□ -0.01
CLN3-218ENST00000565688 CD34P28906 385 aa15□□□□□ -0.01
CLN3-218ENST00000565688 CEACAM3P40198 252 aa15□□□□□ -0.01
CLN3-218ENST00000565688 AESQ08117 197 aa15□□□□□ -0.01
CLN3-218ENST00000565688 OXLD1Q5BKU9 147 aa15□□□□□ -0.01
CLN3-218ENST00000565688 Q6ZPA2 131 aa15□□□□□ -0.01
CLN3-218ENST00000565688 OR5AU1Q8NGC0 362 aa15□□□□□ -0.01
CLN3-218ENST00000565688 OR4D6Q8NGJ1 314 aa15□□□□□ -0.01
CLN3-218ENST00000565688 OR13C9Q8NGT0 318 aa15□□□□□ -0.01
CLN3-218ENST00000565688 STMN2Q93045 179 aa15□□□□□ -0.01
CLN3-218ENST00000565688 PELI1Q96FA3 418 aa15□□□□□ -0.01
CLN3-218ENST00000565688 NECAP2Q9NVZ3 263 aa15□□□□□ -0.01
CLN3-218ENST00000565688 EXOGQ9Y2C4 368 aaKnown RBP15□□□□□ -0.01
CLN3-218ENST00000565688 ODAMA1E959 279 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 TOR1AO14656 332 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 PIN1P1O15428 100 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 ALX3O95076 343 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 IGLV1-47P01700 117 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 PRB2P02812 416 aaPredicted RBP14.99□□□□□ -0.01
CLN3-218ENST00000565688 PTGFRP43088 359 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 GLIPR1P48060 266 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms