RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 H3BUI4 141 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 PEX14O75381 377 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 MT-ND2P03891 347 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 PRKACAP17612 351 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 BDH1Q02338 343 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 IL18R1Q13478 541 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 TMEM95Q3KNT9 176 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 SLC25A30Q5SVS4 291 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 C16orf82Q7Z2V1 217 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 RTN4RL2Q86UN3 420 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 SPSB1Q96BD6 273 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 FGGYQ96C11 551 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 NECAP2Q9NVZ3 263 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 DPM3Q9P2X0 92 aa13.71□□□□□ -0.21
CLN3-216ENST00000565316 IGKV1-12A0A0C4DH73 117 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 SH2D1BO14796 132 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 PIN1P1O15428 100 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 KDM4BO94953 1096 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 IGKV1D-12P01611 117 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 CALCBP10092 127 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 LMO1P25800 156 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 CD34P28906 385 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 RASSF2P50749 326 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 CCR9P51686 369 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 NANOS3P60323 173 aaKnown RBP13.7□□□□□ -0.22
CLN3-216ENST00000565316 C1orf146Q5VVC0 180 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 OR52W1Q6IF63 320 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 HEPN1Q6WQI6 88 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 ABHD12Q8N2K0 398 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 OR5AU1Q8NGC0 362 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 OPALINQ96PE5 141 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 COMMD4Q9H0A8 199 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 GAL3ST2Q9H3Q3 398 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 LIN7BQ9HAP6 207 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 EXOSC4Q9NPD3 245 aaKnown RBP13.7□□□□□ -0.22
CLN3-216ENST00000565316 TAS2R3Q9NYW6 316 aa13.7□□□□□ -0.22
CLN3-216ENST00000565316 TRGV10A0A0A0MS01 117 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 FUOMA2VDF0 154 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 E9PQ18 207 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 SIRPB1O00241 398 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 DYNC1I1O14576 645 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 SLC16A6O15403 523 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 OR2H2O95918 312 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 IGLV1-47P01700 117 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 ZNF20P17024 532 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 ARSJQ5FYB0 599 aaPredicted RBP13.69□□□□□ -0.22
CLN3-216ENST00000565316 PRAMEF5Q5TYX0 476 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 BAIAP2L2Q6UXY1 529 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 RNF144BQ7Z419 303 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 TRAPPC6BQ86SZ2 158 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 SAXO1Q8IYX7 474 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 PHF21AQ96BD5 680 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 RHOFQ9HBH0 211 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 GSTK1Q9Y2Q3 226 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 ZNF281Q9Y2X9 895 aa13.69□□□□□ -0.22
CLN3-216ENST00000565316 ATP5HO75947 161 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 CDK2P24941 298 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 BRS3P32247 399 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 SNU13P55769 128 aaKnown RBP13.68□□□□□ -0.22
CLN3-216ENST00000565316 LOXL3P58215 753 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 SNRPGP62308 76 aaKnown RBP13.68□□□□□ -0.22
CLN3-216ENST00000565316 OR10AC1Q8NH08 325 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 ZNF596Q8TC21 504 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 RNFT2Q96EX2 444 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 AKR1E2Q96JD6 320 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 HRASLS5Q96KN8 279 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 HHLA2Q9UM44 414 aa13.68□□□□□ -0.22
CLN3-216ENST00000565316 DAPL1A0PJW8 107 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 SAC3D1A6NKF1 404 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 OR4C45A6NMZ5 311 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 LEUTXA8MZ59 168 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 CSN2P05814 226 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 HTR1AP08908 422 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 GDNFP39905 211 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 GLIPR1P48060 266 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 AESQ08117 197 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 TCTEX1D4Q5JR98 221 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 Q6P435 159 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 CHST4Q8NCG5 386 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 OR51A4Q8NGJ6 313 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 MRAPQ8TCY5 172 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 SGCDQ92629 289 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 RFT1Q96AA3 541 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 AURKAIP1Q9NWT8 199 aaPredicted RBP13.67□□□□□ -0.22
CLN3-216ENST00000565316 IMPAD1Q9NX62 359 aa13.67□□□□□ -0.22
CLN3-216ENST00000565316 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.67□□□□□ -0.22
CLN3-216ENST00000565316 A0A087X0M5 115 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 A0A1B0GX30 115 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 ODAMA1E959 279 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 LY6LH3BQJ8 138 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 OR2F2O95006 317 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 ALX3O95076 343 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 ALPLP05186 524 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 CD24P25063 80 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 MEDAGQ5VYS4 303 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 OR13C9Q8NGT0 318 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 CREB3L1Q96BA8 519 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 PELI1Q96FA3 418 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 COQ2Q96H96 371 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 RBM14Q96PK6 669 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms