RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 RAB3AP20336 220 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 RPL15P61313 204 aaKnown RBP12.74□□□□□ -0.37
VPS39-203ENST00000561797 SRSF4Q08170 494 aaKnown RBP12.74□□□□□ -0.37
VPS39-203ENST00000561797 CCDC58Q4VC31 144 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 OLFML2AQ68BL7 652 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 TCF23Q7RTU1 214 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 SAXO1Q8IYX7 474 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 C8orf59Q8N0T1 100 aaPredicted RBP12.74□□□□□ -0.37
VPS39-203ENST00000561797 OR51A2Q8NGJ7 313 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 PPP1R35Q8TAP8 253 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 GPR148Q8TDV2 347 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 ZNF714Q96N38 554 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 GPER1Q99527 375 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 BABAM2Q9NXR7 383 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 TAS2R4Q9NYW5 299 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 PCDHGB5Q9Y5G0 923 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 CLPSL1A2RUU4 121 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 CASQ2O14958 399 aaPredicted RBP12.73□□□□□ -0.37
VPS39-203ENST00000561797 MAGEB3O15480 346 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 OGG1O15527 345 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 LALBAP00709 142 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 ARG1P05089 322 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 CD2P06729 351 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 IGHV1-8P0DP01 117 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 ZNF44P15621 663 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 OR3A1P47881 315 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 ZP1P60852 638 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 ST3GAL4Q11206 333 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 MED21Q13503 144 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 LY6EQ16553 131 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 DHRS7BQ6IAN0 325 aaPredicted RBP12.73□□□□□ -0.37
VPS39-203ENST00000561797 LHFPL4Q7Z7J7 247 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 TRAPPC6BQ86SZ2 158 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 ZFP41Q8N8Y5 198 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 OR5R1Q8NH85 324 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 NR1H4Q96RI1 486 aaPredicted RBP12.73□□□□□ -0.37
VPS39-203ENST00000561797 NKX3-1Q99801 234 aaPredicted RBP12.73□□□□□ -0.37
VPS39-203ENST00000561797 SLITRK2Q9H156 845 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 MEGF9Q9H1U4 602 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 PPA2Q9H2U2 334 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 ING3Q9NXR8 418 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 RNF114Q9Y508 228 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 HSPE1-MOB4S4R3N1 261 aa12.73□□□□□ -0.37
VPS39-203ENST00000561797 GABRPO00591 440 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 XPNPEP2O43895 674 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 DYNC1I2Q13409 638 aaKnown RBP12.72□□□□□ -0.37
VPS39-203ENST00000561797 LRRC75BQ2VPJ9 315 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 ASPHD2Q6ICH7 369 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 Q6ZSV7 163 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 OR13C5Q8NGS8 318 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 OR13D1Q8NGV5 346 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 OR52N1Q8NH53 320 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 LINC01006Q8NI28 216 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 RPS4Y2Q8TD47 263 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 WFDC12Q8WWY7 111 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 TMEM106AQ96A25 262 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 ORAI1Q96D31 301 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 FAM192AQ9GZU8 254 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 RHOFQ9HBH0 211 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 NKX1-2Q9UD57 310 aaPredicted RBP12.72□□□□□ -0.37
VPS39-203ENST00000561797 ZNF281Q9Y2X9 895 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 LINC00312Q9Y6C7 94 aa12.72□□□□□ -0.37
VPS39-203ENST00000561797 ANK2Q01484 3957 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 A0A0G2JK05 382 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 EFCAB10A6NFE3 127 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 DEGS1O15121 323 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 RBP4P02753 201 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 TGFBR2P37173 567 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 GLIPR1P48060 266 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 P2RX3P56373 397 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 AESQ08117 197 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 PLA1AQ53H76 456 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 LAIR2Q6ISS4 152 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 ZNF529Q6P280 563 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 Q6P435 159 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 AHSA2Q719I0 299 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 DYNAPQ8N1N2 210 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 STX19Q8N4C7 294 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 BPIFB6Q8NFQ5 453 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 OR10K1Q8NGX5 313 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 TNFAIP8L1Q8WVP5 186 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 GHSRQ92847 366 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 SMIM19Q96E16 107 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 CPNE2Q96FN4 548 aaPredicted RBP12.71□□□□□ -0.37
VPS39-203ENST00000561797 VCXQ9H320 206 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 DCLRE1BQ9H816 532 aa12.71□□□□□ -0.37
VPS39-203ENST00000561797 PNMA8CA0A1B0GUJ8 204 aa12.7□□□□□ -0.38
VPS39-203ENST00000561797 SLC33A1O00400 549 aaPredicted RBP12.7□□□□□ -0.38
VPS39-203ENST00000561797 LMO1P25800 156 aa12.7□□□□□ -0.38
VPS39-203ENST00000561797 ERP29P30040 261 aaKnown RBP12.7□□□□□ -0.38
VPS39-203ENST00000561797 MTNR1BP49286 362 aa12.7□□□□□ -0.38
VPS39-203ENST00000561797 DMKNQ6E0U4 476 aaPredicted RBP12.7□□□□□ -0.38
VPS39-203ENST00000561797 PXT1Q8NFP0 134 aa12.7□□□□□ -0.38
VPS39-203ENST00000561797 CNOT2Q9NZN8 540 aaKnown RBP12.7□□□□□ -0.38
VPS39-203ENST00000561797 PSORS1C1Q9UIG5 152 aa12.7□□□□□ -0.38
VPS39-203ENST00000561797 ING4Q9UNL4 249 aa12.7□□□□□ -0.38
VPS39-203ENST00000561797 UBE2J1Q9Y385 318 aaPredicted RBP12.7□□□□□ -0.38
VPS39-203ENST00000561797 SESN1Q9Y6P5 492 aa12.7□□□□□ -0.38
VPS39-203ENST00000561797 TRGV10A0A0A0MS01 117 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 FUOMA2VDF0 154 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms