RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 J3QLW9 94 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 J3QRE1 110 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 FBXO24O75426 580 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 CYB5AP00167 134 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 HTR1AP08908 422 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 ZNF19P17023 458 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 EMX1Q04741 257 aaPredicted RBP15.26■□□□□ 0.03
VPS35-202ENST00000561713 MEF2CQ06413 473 aaPredicted RBP15.26■□□□□ 0.03
VPS35-202ENST00000561713 KPNB1Q14974 876 aaKnown RBP15.26■□□□□ 0.03
VPS35-202ENST00000561713 TMEM244Q5VVB8 128 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 Q8IYB0 196 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 CCDC54Q8NEL0 328 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 DNAAF1Q8NEP3 725 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 OR13C3Q8NGS6 347 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 PELI1Q96FA3 418 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 MBOAT4Q96T53 435 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 NEK6Q9HC98 313 aa15.26■□□□□ 0.03
VPS35-202ENST00000561713 ADARB2-AS1A8MUL3 147 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 OCM2P0CE71 109 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 OCMP0CE72 109 aaPredicted RBP15.25■□□□□ 0.03
VPS35-202ENST00000561713 CD24P25063 80 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 GDNFP39905 211 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 P2RX3P56373 397 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 ARSJQ5FYB0 599 aaPredicted RBP15.25■□□□□ 0.03
VPS35-202ENST00000561713 VAX1Q5SQQ9 334 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 FOXB2Q5VYV0 432 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 LPCAT4Q643R3 524 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 LHFPL2Q6ZUX7 228 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 UTS2BQ765I0 119 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 C10orf35Q96D05 121 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 LGALS12Q96DT0 336 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 MALSU1Q96EH3 234 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 HRASLS5Q96KN8 279 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 CITED2Q99967 270 aaPredicted RBP15.25■□□□□ 0.03
VPS35-202ENST00000561713 CLEC7AQ9BXN2 247 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 TMEM133Q9H2Q1 129 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 EXOSC4Q9NPD3 245 aaKnown RBP15.25■□□□□ 0.03
VPS35-202ENST00000561713 ORC6Q9Y5N6 252 aa15.25■□□□□ 0.03
VPS35-202ENST00000561713 TENM3Q9P273 2699 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 OR4C45A6NMZ5 311 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 OR2H2O95918 312 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 PRKACBP22694 351 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 BLCAPP62952 87 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 PDZK1IP1Q13113 114 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 ZNF146Q15072 292 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 NDUFA11Q86Y39 141 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 ENTHD1Q8IYW4 607 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 Q8N2B8 174 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 CBR4Q8N4T8 237 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 OR4P4Q8NGL7 312 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 SPSB1Q96BD6 273 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 ALG8Q9BVK2 526 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 HMG20AQ9NP66 347 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 HHLA2Q9UM44 414 aa15.24■□□□□ 0.03
VPS35-202ENST00000561713 MGST3O14880 152 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 ZNF44P15621 663 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 GLIPR1P48060 266 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 SNRPGP62308 76 aaKnown RBP15.23■□□□□ 0.03
VPS35-202ENST00000561713 SCN1BQ07699 218 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 ATXN7L3Q14CW9 347 aaPredicted RBP15.23■□□□□ 0.03
VPS35-202ENST00000561713 SPIN3Q5JUX0 258 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 UTF1Q5T230 341 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 FDX2Q6P4F2 183 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 LHFPL3Q86UP9 236 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 ACBD7Q8N6N7 88 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 OR4F17Q8NGA8 305 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 OR4F4Q96R69 305 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 ISG20L2Q9H9L3 353 aaKnown RBP15.23■□□□□ 0.03
VPS35-202ENST00000561713 AMBNQ9NP70 447 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 MYRFQ9Y2G1 1151 aa15.23■□□□□ 0.03
VPS35-202ENST00000561713 E9PQ18 207 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 HSPB6O14558 160 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 KDM4BO94953 1096 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 MPIG6BO95866 241 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 ISG15P05161 165 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 CDK2P24941 298 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 ALDH3A2P51648 485 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 AESQ08117 197 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 ALKBH1Q13686 389 aaKnown RBP15.22■□□□□ 0.03
VPS35-202ENST00000561713 MINOS1Q5TGZ0 78 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 DTX3Q8N9I9 347 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 WIPF2Q8TF74 440 aaPredicted RBP15.22■□□□□ 0.03
VPS35-202ENST00000561713 TRUB1Q8WWH5 349 aaKnown RBP15.22■□□□□ 0.03
VPS35-202ENST00000561713 COQ2Q96H96 371 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 PRSS22Q9GZN4 317 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.22■□□□□ 0.03
VPS35-202ENST00000561713 PITPNC1Q9UKF7 332 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 GMPPBQ9Y5P6 360 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 MINOS1-NBL1R4GNA1 71 aa15.22■□□□□ 0.03
VPS35-202ENST00000561713 A0A1W2PRX2 142 aa15.21■□□□□ 0.03
VPS35-202ENST00000561713 SH2D7A6NKC9 451 aaPredicted RBP15.21■□□□□ 0.03
VPS35-202ENST00000561713 E9PI62 339 aa15.21■□□□□ 0.03
VPS35-202ENST00000561713 DBTP11182 482 aaKnown RBP15.21■□□□□ 0.03
VPS35-202ENST00000561713 IGLL1P15814 213 aa15.21■□□□□ 0.03
VPS35-202ENST00000561713 GABRB1P18505 474 aa15.21■□□□□ 0.03
VPS35-202ENST00000561713 VDAC2P45880 294 aaPredicted RBP15.21■□□□□ 0.03
VPS35-202ENST00000561713 IL18R1Q13478 541 aa15.21■□□□□ 0.03
VPS35-202ENST00000561713 PPIL3Q9H2H8 161 aaKnown RBP15.21■□□□□ 0.03
VPS35-202ENST00000561713 ZNF286AQ9HBT8 521 aa15.21■□□□□ 0.03
VPS35-202ENST00000561713 GLS2Q9UI32 602 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms