RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZNF837Q96EG3 531 aaPredicted RBP9.89□□□□□ -0.83
LDLR-208ENST00000558518 ZNF799Q96GE5 643 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 TUBA4BQ9H853 241 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 HDGFL3Q9Y3E1 203 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 TRAV39A0A0B4J263 110 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 PPIHO43447 177 aaKnown RBP9.88□□□□□ -0.83
LDLR-208ENST00000558518 TLX3O43711 291 aaPredicted RBP9.88□□□□□ -0.83
LDLR-208ENST00000558518 POU2F2P09086 479 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 SEC11BP0C7V7 166 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 FOSL1P15407 271 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 AADACP22760 399 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 THEM4Q5T1C6 240 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 LHFPL1Q86WI0 220 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 TMEM37Q8WXS4 190 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 UCN2Q96RP3 112 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 RSG1Q9BU20 258 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 METTL9Q9H1A3 318 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 ST3GAL6Q9Y274 331 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 CRYM-AS1A6NIL9 109 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 SHISA7A6NL88 538 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 NPIPA2E9PIF3 369 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 NPIPA3F8WFD2 350 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 LYZL4Q96KX0 146 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 GABRG3Q99928 467 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 SYT3Q9BQG1 590 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 CABLES2Q9BTV7 478 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 CEP250Q9BV73 2442 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 TPRP12270 2363 aaKnown RBP9.88□□□□□ -0.83
LDLR-208ENST00000558518 IGSF23A1L1A6 192 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 TLCD2A6NGC4 264 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 OR5H1A6NKK0 313 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 NR2C1P13056 603 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 DDTP30046 118 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 DPPA2Q7Z7J5 298 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 TGIF2LXQ8IUE1 241 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 TVP23CQ96ET8 276 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 CHST5Q9GZS9 411 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 ZNF665Q9H7R5 613 aa9.88□□□□□ -0.83
LDLR-208ENST00000558518 SERPINE3A8MV23 424 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 MSTNO14793 375 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 GAPDHP04406 335 aaKnown RBP9.87□□□□□ -0.83
LDLR-208ENST00000558518 CTSDP07339 412 aaPredicted RBP9.87□□□□□ -0.83
LDLR-208ENST00000558518 ELOBQ15370 118 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 LYPD6Q86Y78 171 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 SGCZQ96LD1 299 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 ZNF385AQ96PM9 386 aaKnown RBP9.87□□□□□ -0.83
LDLR-208ENST00000558518 LAMP3Q9UQV4 416 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 IFNL4K9M1U5 179 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 FUT3P21217 361 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 RBP2P50120 134 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 MUCL1Q96DR8 90 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 MISP3Q96FF7 219 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 PLK3Q9H4B4 646 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 IFNA10P01566 189 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 CD200P41217 278 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 DCAF7P61962 342 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 PLCXD3Q63HM9 321 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 LIAT1Q6ZQX7 453 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 OR1K1Q8NGR3 316 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 ALKBH3Q96Q83 286 aaPredicted RBP9.87□□□□□ -0.83
LDLR-208ENST00000558518 CALHM2Q9HA72 323 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 ALKBH4Q9NXW9 302 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 B3GAT1Q9P2W7 334 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 POMT1Q9Y6A1 747 aa9.87□□□□□ -0.83
LDLR-208ENST00000558518 CHD3Q12873 2000 aaKnown RBP9.86□□□□□ -0.83
LDLR-208ENST00000558518 A0A1W2PPQ1 181 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 CHST1O43916 411 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 SELLP14151 372 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 APLNRP35414 380 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 RAB1AP62820 205 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 ZNF574Q6ZN55 896 aaPredicted RBP9.86□□□□□ -0.83
LDLR-208ENST00000558518 ULBP2Q9BZM5 246 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 FREM1Q5H8C1 2179 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 CCL2P13500 99 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 B4GALT1P15291 398 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 FOSL2P15408 326 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 ZNF266Q14584 549 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 TMEM187Q14656 261 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 KIAA0895LQ68EN5 471 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 ZNF774Q6NX45 483 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 BEND4Q6ZU67 534 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 MRPL41Q8IXM3 137 aaKnown RBP9.86□□□□□ -0.83
LDLR-208ENST00000558518 TMEM171Q8WVE6 324 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 EGLN1Q9GZT9 426 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 LMAN1LQ9HAT1 526 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 ZNF286AQ9HBT8 521 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 CA14Q9ULX7 337 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 STRAPQ9Y3F4 350 aaKnown RBP9.86□□□□□ -0.83
LDLR-208ENST00000558518 MMACHCQ9Y4U1 282 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 SEC14L6B5MCN3 397 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 EDN3P14138 238 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 LBX1P52954 281 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 FAM189A2Q15884 450 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 HLA-BQ31612 363 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 OR8G2PQ6IF36 304 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 SLC25A26Q70HW3 274 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 C1orf87Q8N0U7 546 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 OR10AD1Q8NGE0 317 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 TAAR9Q96RI9 348 aa9.86□□□□□ -0.83
LDLR-208ENST00000558518 C2orf16Q68DN1 1984 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms