RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 OPRM1P35372 400 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 NPY4RP50391 375 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 IL13RA2Q14627 380 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 C17orf107Q6ZR85 190 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 TMEM185AQ8NFB2 350 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 KLF14Q8TD94 323 aaPredicted RBP14.38□□□□□ -0.11
LDLR-206ENST00000557958 MUCL1Q96DR8 90 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 HDHD3Q9BSH5 251 aaPredicted RBP14.38□□□□□ -0.11
LDLR-206ENST00000557958 PIGMQ9H3S5 423 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 Q9UFV3 132 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 GPR132Q9UNW8 380 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 SLC25A15Q9Y619 301 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 MAP1BP46821 2468 aaKnown RBP14.38□□□□□ -0.11
LDLR-206ENST00000557958 C9orf170A2RU37 121 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 MSTNO14793 375 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 DUS4LO95620 317 aaKnown RBP14.38□□□□□ -0.11
LDLR-206ENST00000557958 GCH1P30793 250 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 PPP1R1AQ13522 171 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 OR8G1Q15617 311 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 C3orf36Q3SXR2 165 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 ZNF718Q3SXZ3 478 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 FAM209AQ5JX71 171 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 ALKBH2Q6NS38 261 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 PEG10Q86TG7 708 aaKnown RBP14.38□□□□□ -0.11
LDLR-206ENST00000557958 CCDC28AQ8IWP9 274 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 OR13G1Q8NGZ3 307 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 MARS2Q96GW9 593 aaKnown RBP14.38□□□□□ -0.11
LDLR-206ENST00000557958 CHMP1AQ9HD42 196 aaPredicted RBP14.38□□□□□ -0.11
LDLR-206ENST00000557958 PIPOXQ9P0Z9 390 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 OPN4Q9UHM6 478 aa14.38□□□□□ -0.11
LDLR-206ENST00000557958 C14orf166Q9Y224 244 aaKnown RBP14.38□□□□□ -0.11
LDLR-206ENST00000557958 SDCBPO00560 298 aaPredicted RBP14.37□□□□□ -0.11
LDLR-206ENST00000557958 SYNGR1O43759 233 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 CRYZL1O95825 349 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 PRKACAP17612 351 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 GMFBP60983 142 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 ERVS71-1P61550 626 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 PSG7Q13046 419 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 FAM76BQ5HYJ3 339 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 TEX261Q6UWH6 196 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 FAM58AQ8N1B3 248 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 ST6GALNAC3Q8NDV1 305 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 OR8H1Q8NGG4 311 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 MITD1Q8WV92 249 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 DHRS9Q9BPW9 319 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 CLEC4MQ9H2X3 399 aaPredicted RBP14.37□□□□□ -0.11
LDLR-206ENST00000557958 TMEM100Q9NV29 134 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 RCC2Q9P258 522 aaKnown RBP14.37□□□□□ -0.11
LDLR-206ENST00000557958 SPEF1Q9Y4P9 236 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 U3KQ87 197 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 ZGRF1Q86YA3 2104 aa14.37□□□□□ -0.11
LDLR-206ENST00000557958 IGHV2OR16-5A0A0B4J2B6 119 aa14.36□□□□□ -0.11
LDLR-206ENST00000557958 LEUTXA8MZ59 168 aa14.36□□□□□ -0.11
LDLR-206ENST00000557958 MCRIP1C9JLW8 97 aa14.36□□□□□ -0.11
LDLR-206ENST00000557958 GLAP06280 429 aa14.36□□□□□ -0.11
LDLR-206ENST00000557958 OR5H8P0DN80 308 aa14.36□□□□□ -0.11
LDLR-206ENST00000557958 AP2S1P53680 142 aaPredicted RBP14.36□□□□□ -0.11
LDLR-206ENST00000557958 SRSF7Q16629 238 aaKnown RBP eCLIP14.36□□□□□ -0.11
LDLR-206ENST00000557958 OR8G5Q8NG78 346 aa14.36□□□□□ -0.11
LDLR-206ENST00000557958 CITED4Q96RK1 184 aa14.36□□□□□ -0.11
LDLR-206ENST00000557958 TMPRSS13Q9BYE2 586 aa14.36□□□□□ -0.11
LDLR-206ENST00000557958 RIMS4Q9H426 269 aaPredicted RBP14.36□□□□□ -0.11
LDLR-206ENST00000557958 PURGQ9UJV8 347 aaKnown RBP14.36□□□□□ -0.11
LDLR-206ENST00000557958 IGHV1-18A0A0C4DH31 117 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 PGAM2P15259 253 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 KITLGP21583 273 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 CALCRP30988 508 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 GLP1RP43220 463 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 H2BFSP57053 126 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 MZT1Q08AG7 82 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 RBM39Q14498 530 aaKnown RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 AADACL3Q5VUY0 350 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 ZNF474Q6S9Z5 364 aaPredicted RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 SPERTQ8NA61 448 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 OR11H4Q8NGC9 324 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 OR5M8Q8NGP6 311 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 NEK7Q8TDX7 302 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 GTF3AQ92664 365 aaKnown RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 USB1Q9BQ65 265 aaKnown RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 ZNF2Q9BSG1 426 aaPredicted RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 HEXA-AS1Q9H8Q6 139 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 FN3KRPQ9HA64 309 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 ZNF581Q9P0T4 197 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 SHOXO15266 292 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 TIMM8AO60220 97 aaPredicted RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 FGL1Q08830 312 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 MBNL2Q5VZF2 373 aaKnown RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 SLC22A25Q6T423 547 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 FIP1L1Q6UN15 594 aaKnown RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 BATF2Q8N1L9 274 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 ADAD2Q8NCV1 583 aaKnown RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 ZNF680Q8NEM1 530 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 RND1Q92730 232 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 S100PBPQ96BU1 408 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 C5orf66Q9H5L9 145 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 IFT22Q9H7X7 185 aa14.35□□□□□ -0.11
LDLR-206ENST00000557958 TPRP12270 2363 aaKnown RBP14.35□□□□□ -0.11
LDLR-206ENST00000557958 NBEAQ8NFP9 2946 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 CCL21O00585 134 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 PPP3CBP16298 524 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms