RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 GCNT2Q8N0V5 402 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 CARFQ8N187 725 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 CLCC1Q96S66 551 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 NECAP2Q9NVZ3 263 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 FBXO9Q9UK97 447 aaPredicted RBP11.72□□□□□ -0.53
PTPN1-202ENST00000541713 ACACAQ13085 2346 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 ARGFXA6NJG6 315 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 SYNGR1O43759 233 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 NAT2P11245 290 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 CFPP27918 469 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 RAC3P60763 192 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 EXT1Q16394 746 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 HAGHQ16775 308 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 MST1LQ2TV78 715 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 HIKESHIQ53FT3 197 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 SLC25A53Q5H9E4 307 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 RAB11FIP2Q7L804 512 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 MRPL21Q7Z2W9 205 aaKnown RBP11.72□□□□□ -0.53
PTPN1-202ENST00000541713 SLC35G3Q8N808 338 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 OR2H1Q9GZK4 316 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 WFDC1Q9HC57 220 aa11.72□□□□□ -0.53
PTPN1-202ENST00000541713 TBPP20226 339 aa11.71□□□□□ -0.53
PTPN1-202ENST00000541713 ACTBL2Q562R1 376 aa11.71□□□□□ -0.53
PTPN1-202ENST00000541713 DCAF12Q5T6F0 453 aa11.71□□□□□ -0.53
PTPN1-202ENST00000541713 DHRS11Q6UWP2 260 aa11.71□□□□□ -0.53
PTPN1-202ENST00000541713 PPP1R32Q7Z5V6 425 aa11.71□□□□□ -0.53
PTPN1-202ENST00000541713 ZNF565Q8N9K5 539 aa11.71□□□□□ -0.53
PTPN1-202ENST00000541713 SUCNR1Q9BXA5 334 aa11.71□□□□□ -0.53
PTPN1-202ENST00000541713 ZNF175Q9Y473 711 aa11.71□□□□□ -0.53
PTPN1-202ENST00000541713 ZNF503-AS2A6NEH8 195 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF732B4DXR9 585 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 TOX3O15405 576 aaPredicted RBP11.71□□□□□ -0.54
PTPN1-202ENST00000541713 SYNGR3O43761 229 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF44P15621 663 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 CTRB1P17538 263 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 PEA15Q15121 130 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 CTRB2Q6GPI1 263 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 ADAM5Q6NVV9 412 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 LHFPL1Q86WI0 220 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 OR2V1Q8NHB1 315 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 RXFP4Q8TDU9 374 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 PCED1AQ9H1Q7 454 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 GPR35Q9HC97 309 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 TIMM10BQ9Y5J6 103 aa11.71□□□□□ -0.54
PTPN1-202ENST00000541713 GLAP06280 429 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 PET100P0DJ07 73 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 NAT1P18440 290 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 CBX5P45973 191 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 IL11RAQ14626 422 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 CNN3Q15417 329 aaKnown RBP11.7□□□□□ -0.54
PTPN1-202ENST00000541713 OR2T2Q6IF00 324 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 FAHD2BQ6P2I3 314 aaPredicted RBP11.7□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF695Q8IW36 515 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 EXTL1Q92935 676 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 FAHD2AQ96GK7 314 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 NRIP2Q9BQI9 281 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 MYOZ1Q9NP98 299 aaPredicted RBP11.7□□□□□ -0.54
PTPN1-202ENST00000541713 FAM86C1Q9NVL1 165 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 STARD10Q9Y365 291 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 NPIPB13A6NJU9 1138 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 NPIPB4C9JG80 1138 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 VAMP5O95183 116 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 FGF5P12034 268 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 PPP1CCP36873 323 aaKnown RBP11.7□□□□□ -0.54
PTPN1-202ENST00000541713 MRPS34P82930 218 aaKnown RBP11.7□□□□□ -0.54
PTPN1-202ENST00000541713 FAM89BQ8N5H3 189 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 SLC30A7Q8NEW0 376 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 TMEM54Q969K7 222 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 RARRES2Q99969 163 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF286AQ9HBT8 521 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 CCL28Q9NRJ3 127 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 GLS2Q9UI32 602 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 FZR1Q9UM11 496 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 USF3Q68DE3 2245 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 hCG_1809904A0A1W2PP81 198 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 A0A1W2PR64 198 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 A0A1W2PRV1 198 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 WRBO00258 174 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 IGHV3-13P01766 116 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 IGHV3-7P01780 117 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 RAB35Q15286 201 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 LTC4SQ16873 150 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 FAM53AQ6NSI3 398 aaPredicted RBP11.7□□□□□ -0.54
PTPN1-202ENST00000541713 DHRS13Q6UX07 377 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 MCEMP1Q8IX19 187 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF100Q8IYN0 542 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 ZNF552Q9H707 407 aaPredicted RBP11.7□□□□□ -0.54
PTPN1-202ENST00000541713 OR14J1Q9UGF5 321 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 IL17BQ9UHF5 180 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 V9GYS6 101 aa11.7□□□□□ -0.54
PTPN1-202ENST00000541713 TERTO14746 1132 aaKnown RBP11.69□□□□□ -0.54
PTPN1-202ENST00000541713 HMGB3O15347 200 aaKnown RBP11.69□□□□□ -0.54
PTPN1-202ENST00000541713 HSPA12AO43301 675 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 DKK1O94907 266 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 NR2C1P13056 603 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 SNRPEP62304 92 aaKnown RBP11.69□□□□□ -0.54
PTPN1-202ENST00000541713 ABHD17BQ5VST6 288 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 GGNQ86UU5 652 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 KIRREL1Q96J84 757 aa11.69□□□□□ -0.54
PTPN1-202ENST00000541713 AIFM2Q9BRQ8 373 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms