RNA–Protein interactions for RNA: ENST00000539097.2

HIF1A-204, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-204ENST00000539097 FAM19A5Q7Z5A7 132 aaPredicted RBP0.66□□□□□ -2.3
HIF1A-204ENST00000539097 SLC51BQ86UW2 128 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 TCAIMQ8N3R3 496 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 C12orf45Q8N5I9 185 aaPredicted RBP0.66□□□□□ -2.3
HIF1A-204ENST00000539097 Q8N9L7 120 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 SUMF2Q8NBJ7 301 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 OR4K17Q8NGC6 315 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 ZNF502Q8TBZ5 544 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 ACTRT1Q8TDG2 376 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 APH1AQ96BI3 265 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 RDH12Q96NR8 316 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 CHAC1Q9BUX1 264 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 EBPLQ9BY08 206 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 TLNRD1Q9H1K6 362 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 VCX3BQ9H321 246 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 TPK1Q9H3S4 243 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 PLEKHA1Q9HB21 404 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 C6orf50Q9HD87 102 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 NLE1Q9NVX2 485 aaPredicted RBP0.66□□□□□ -2.3
HIF1A-204ENST00000539097 RBFOX1Q9NWB1 397 aaKnown RBP0.66□□□□□ -2.3
HIF1A-204ENST00000539097 RAB23Q9ULC3 237 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 SIGLEC7Q9Y286 467 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 BTRCQ9Y297 605 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 RCL1Q9Y2P8 373 aaKnown RBP0.66□□□□□ -2.3
HIF1A-204ENST00000539097 BZW2Q9Y6E2 419 aaKnown RBP0.66□□□□□ -2.3
HIF1A-204ENST00000539097 SMAD5-AS1Q9Y6J3 95 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 SLIT3O75094 1523 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 DISP1Q96F81 1524 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 FAM135AQ9P2D6 1515 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 ITSN2Q9NZM3 1697 aa0.66□□□□□ -2.3
HIF1A-204ENST00000539097 ABCC5O15440 1437 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 DCCP43146 1447 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 IGHV1-3A0A0C4DH29 117 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 A0A1W2PQL4 384 aaPredicted RBP0.65□□□□□ -2.3
HIF1A-204ENST00000539097 CIB4A0PJX0 185 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 H7C2Y5 167 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 K7EM74 188 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 CCRL2O00421 344 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 SULT1B1O43704 296 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 HSBP1O75506 76 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 GPR75O95800 540 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 HLA-DRAP01903 254 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 PPBPP02775 128 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 HLA-DPB1P04440 258 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 IFNW1P05000 195 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 TPM1P09493 284 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 CECR9P0C854 216 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 PGA5P0DJD9 388 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 ZNF30P17039 623 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 ZBTB25P24278 435 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 MYCNOSP40205 109 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 PPP1R2P41236 205 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 MAGEA3P43357 314 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 MAGEA6P43360 314 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 IQGAP1P46940 1657 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 HCAR3P49019 387 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 NKX2-5P52952 324 aaPredicted RBP0.65□□□□□ -2.3
HIF1A-204ENST00000539097 NUTF2P61970 127 aaKnown RBP0.65□□□□□ -2.3
HIF1A-204ENST00000539097 ARHGEF5Q12774 1597 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 ARFRP1Q13795 201 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 PON3Q15166 354 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 BSXQ3C1V8 233 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 TMEM176BQ3YBM2 270 aaPredicted RBP0.65□□□□□ -2.3
HIF1A-204ENST00000539097 TFDP3Q5H9I0 405 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 TPTE2P1Q5T6R2 138 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 FAM27D1Q5T7N8 215 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 HIST2H3PS2Q5TEC6 136 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 PPP1R2P3Q6NXS1 205 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 DNM1P34Q6PK57 102 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 DRAM2Q6UX65 266 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 DNMBPQ6XZF7 1577 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 SLC13A5Q86YT5 568 aaPredicted RBP0.65□□□□□ -2.3
HIF1A-204ENST00000539097 CUL9Q8IWT3 2517 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 TRAM1L1Q8N609 369 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 ZNF645Q8N7E2 425 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 BPIFB6Q8NFQ5 453 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 LYPD6BQ8NI32 183 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 HAVCR2Q8TDQ0 301 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 RNF133Q8WVZ7 376 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 ESR2Q92731 530 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 CPNE4Q96A23 557 aaPredicted RBP0.65□□□□□ -2.3
HIF1A-204ENST00000539097 CCDC126Q96EE4 140 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 CERS2Q96G23 380 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 RNF145Q96MT1 663 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 NIPSNAP1Q9BPW8 284 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 HINT2Q9BX68 163 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 FANCD2Q9BXW9 1451 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 PCDH11XQ9BZA7 1347 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 TM6SF2Q9BZW4 377 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 HRASLSQ9HDD0 168 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 PSG8Q9UQ74 426 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 TP53TG1Q9Y2A0 90 aa0.65□□□□□ -2.3
HIF1A-204ENST00000539097 CCDC88AQ3V6T2 1871 aa0.65□□□□□ -2.31
HIF1A-204ENST00000539097 KDM3BQ7LBC6 1761 aa0.65□□□□□ -2.31
HIF1A-204ENST00000539097 PTPN23Q9H3S7 1636 aa0.65□□□□□ -2.31
HIF1A-204ENST00000539097 ADAMTS12P58397 1594 aa0.65□□□□□ -2.31
HIF1A-204ENST00000539097 PRDM15P57071 1507 aaPredicted RBP0.65□□□□□ -2.31
HIF1A-204ENST00000539097 KDM5DQ9BY66 1539 aa0.65□□□□□ -2.31
HIF1A-204ENST00000539097 KIF24Q5T7B8 1368 aa0.65□□□□□ -2.31
HIF1A-204ENST00000539097 IGLV4-69A0A075B6H9 119 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms