RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 C9orf170A2RU37 121 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 DEDDO75618 318 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 IGSF11Q5DX21 431 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 ANKRD33Q7Z3H0 272 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 LRP11Q86VZ4 500 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 DYRK2Q92630 601 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 NPTNQ9Y639 398 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 DEFB108AA8MXU0 73 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 TBX19O60806 448 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 BRS3P32247 399 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 DLX1P56177 255 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 MIA3Q5JRA6 1907 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 RSPO2Q6UXX9 243 aaPredicted RBP9.46□□□□□ -0.9
CLIP1-209ENST00000537178 WDR31Q8NA23 367 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 LRRC29Q8WV35 223 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 SLC25A33Q9BSK2 321 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 ARRDC1-AS1Q9H2J1 176 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 SLC2A9Q9NRM0 540 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 FBXL17Q9UF56 701 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 ZFC3H1O60293 1989 aaKnown RBP9.46□□□□□ -0.9
CLIP1-209ENST00000537178 SHROOM3Q8TF72 1996 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 ELOA3CA0A087WX78 387 aaPredicted RBP9.46□□□□□ -0.9
CLIP1-209ENST00000537178 TMEM272A0A1B0GTI8 110 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 CXorf51AA0A1B0GTR3 108 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 RER1O15258 196 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 WNT1P04628 370 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF32P17041 273 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 SDHBP21912 280 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 LYZP61626 148 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 TNFAIP6P98066 277 aaPredicted RBP9.46□□□□□ -0.9
CLIP1-209ENST00000537178 PABPC1L2AQ5JQF8 200 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 TMEM65Q6PI78 240 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 Q6ZN92 141 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF788Q6ZQV5 615 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 LINC01465Q8N7H1 131 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 NPEPL1Q8NDH3 523 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 OR2D2Q9H210 308 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 MANBALQ9NQG1 85 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 NAT8Q9UHE5 227 aa9.46□□□□□ -0.9
CLIP1-209ENST00000537178 NLRC5Q86WI3 1866 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 ANKRD36A6QL64 1941 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 ORM2P19652 201 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 KLF3P57682 345 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-209ENST00000537178 ZXDAP98168 799 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 LIMS2Q7Z4I7 341 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 TUSC5Q8IXB3 177 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 OR10G8Q8NGN5 311 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 NPAS1Q99742 590 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 SLIRPQ9GZT3 109 aaKnown RBP9.45□□□□□ -0.9
CLIP1-209ENST00000537178 ZFP64Q9NPA5 681 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 M0R2Z0 102 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 COX7A1P24310 79 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 CCL7P80098 99 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 LYPD8Q6UX82 237 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 DUSP18Q8NEJ0 188 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 OR4D10Q8NGI6 311 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 CCL17Q92583 94 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 TNFRSF12AQ9NP84 129 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 C20orf141Q9NUB4 165 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 LPAR3Q9UBY5 353 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 MPC1Q9Y5U8 109 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 KLK10O43240 276 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 GSTZ1O43708 216 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-209ENST00000537178 CTAG2O75638 210 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 TSPAN12O95859 305 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 LGALS7P47929 136 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF117Q03924 483 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 RIGQ13278 110 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 IL11RAQ14626 422 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 PDCD1Q15116 288 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 ST3GAL2Q16842 350 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 C6orf201Q7Z4U5 140 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 PRO1933Q9H354 126 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 PRDM7Q9NQW5 492 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 C1RLQ9NZP8 487 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 MTCH2Q9Y6C9 303 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 MYO7AQ13402 2215 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 WISP3O95389 354 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-209ENST00000537178 SRP14P37108 136 aaKnown RBP9.45□□□□□ -0.9
CLIP1-209ENST00000537178 OR3A1P47881 315 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 OR3A4PP47883 348 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 SURF2Q15527 256 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-209ENST00000537178 FAHD2BQ6P2I3 314 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-209ENST00000537178 FAHD2AQ96GK7 314 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF275Q9NSD4 429 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-209ENST00000537178 DOK5Q9P104 306 aa9.45□□□□□ -0.9
CLIP1-209ENST00000537178 HMSDA8MTL9 139 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 AP4M1O00189 453 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 CDC14BO60729 498 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 CSN3P07498 182 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 FMODQ06828 376 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 TMEM215Q68D42 235 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 ZNF774Q6NX45 483 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 TMEM251Q8N6I4 163 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 GPX7Q96SL4 187 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 K7ESF4 209 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 MFNGO00587 321 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 SEMA7AO75326 666 aa9.44□□□□□ -0.9
CLIP1-209ENST00000537178 KIR2DL1P43626 348 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-209ENST00000537178 KIR2DL2P43627 348 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms