RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 RSU1Q15404 277 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 SCGB2B2Q4G0G5 96 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 MOB3CQ70IA8 216 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 MYPOPQ86VE0 399 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-208ENST00000537004 OR52B4Q8NGK2 314 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 NANOS1Q8WY41 292 aaKnown RBP10.17□□□□□ -0.78
CLIP1-208ENST00000537004 CYYR1Q96J86 154 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 RADILQ96JH8 1075 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 PRRT1Q99946 306 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 SMR3AQ99954 134 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.17□□□□□ -0.78
CLIP1-208ENST00000537004 AMDHD2Q9Y303 409 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 IGHV1-18A0A0C4DH31 117 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 TMEM82A0PJX8 343 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF850A8MQ14 1090 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ATP6V1G2-DDX39BF2Z307 99 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 HTR3BO95264 441 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 NGFP01138 241 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 SERPINA5P05154 406 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 CELA3BP08861 270 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 TBPP20226 339 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 APLNRP35414 380 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ATP1B3P54709 279 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ARFRP1Q13795 201 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 HLXQ14774 488 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 Q5BKY6 102 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 MRPL21Q7Z2W9 205 aaKnown RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 CIARTQ8N365 385 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 SPICQ8N5J4 248 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 OR56B2PQ8NGI1 322 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ZFAND1Q8TCF1 268 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 SNAPC3Q92966 411 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 HYLS1Q96M11 299 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 Q96M66 194 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 PECRQ9BY49 303 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF436Q9C0F3 470 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 CHST6Q9GZX3 395 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 POFUT1Q9H488 388 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 GSX1Q9H4S2 264 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 SLC2A8Q9NY64 477 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ANAPC10Q9UM13 185 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 STARD10Q9Y365 291 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 NPTNQ9Y639 398 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 CSTBP04080 98 aaKnown RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 GABRR1P24046 479 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 MPZP25189 248 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 HTR2BP41595 481 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 AP2S1P53680 142 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ATP5J2P56134 94 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 UBE2NP61088 152 aaKnown RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ZMYND11Q15326 602 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ASCL4Q6XD76 172 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF767PQ75MW2 155 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 MDP1Q86V88 176 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 SLC38A6Q8IZM9 456 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 OR13C8Q8NGS7 320 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 OR4K15Q8NH41 348 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ST8SIA4Q92187 359 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 BOD1Q96IK1 185 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 Q96MF0 132 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 OCSTAMPQ9BR26 566 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 PAPOLGQ9BWT3 736 aaKnown RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 ALX4Q9H161 411 aaPredicted RBP10.16□□□□□ -0.78
CLIP1-208ENST00000537004 DLL4Q9NR61 685 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 PTTG3PQ9NZH4 202 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 MGAT4CQ9UBM8 478 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 GPR160Q9UJ42 338 aa10.16□□□□□ -0.78
CLIP1-208ENST00000537004 UBE2QL1A1L167 161 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 SERPINE3A8MV23 424 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 OVOL3O00110 214 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF780AO75290 641 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-208ENST00000537004 CECR9P0C854 216 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 CBX5P45973 191 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 PDZK1IP1Q13113 114 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 ARL6IP1Q15041 203 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 ATPAF1Q5TC12 328 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-208ENST00000537004 SSX8Q7RTT4 187 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 TMED4Q7Z7H5 227 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 CCDC107Q8WV48 283 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF75AQ96N20 296 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 GSX2Q9BZM3 304 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 RANBP3Q9H6Z4 567 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF701Q9NV72 531 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-208ENST00000537004 EIF3KQ9UBQ5 218 aaKnown RBP10.15□□□□□ -0.78
CLIP1-208ENST00000537004 ATP23Q9Y6H3 246 aa10.15□□□□□ -0.78
CLIP1-208ENST00000537004 IGKV1-12A0A0C4DH73 117 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 IGKV1D-12P01611 117 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 PMP2P02689 132 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 WNT5AP41221 380 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 IDH3GP51553 393 aaPredicted RBP10.14□□□□□ -0.79
CLIP1-208ENST00000537004 PRDX4Q13162 271 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 MICBQ29980 383 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 C4orf46Q504U0 113 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 ESCO2Q56NI9 601 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 SHEQ5VZ18 495 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 NLRC3Q7RTR2 1065 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 C6orf201Q7Z4U5 140 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 SLC51BQ86UW2 128 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 LRRC75A-AS1Q8N1F1 130 aa10.14□□□□□ -0.79
CLIP1-208ENST00000537004 MUC20Q8N307 709 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms