RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZNF439Q8NDP4 499 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 ACVR1CQ8NER5 493 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 OR6N1Q8NGY5 312 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 TMEM170AQ8WVE7 144 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 FRZBQ92765 325 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 NAT6Q93015 286 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 PTX4Q96A99 478 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 SNRNP40Q96DI7 357 aaKnown RBP4.76□□□□□ -1.65
CD44-236ENST00000533222 MS4A10Q96PG2 267 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 BBC3Q96PG8 261 aaPredicted RBP4.76□□□□□ -1.65
CD44-236ENST00000533222 GABRG3Q99928 467 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 DOHHQ9BU89 302 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 C20orf24Q9BUV8 137 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 VAMP8Q9BV40 100 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 NUDT9Q9BW91 350 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 TMEM133Q9H2Q1 129 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 TUBB1Q9H4B7 451 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 RNF167Q9H6Y7 350 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 WDR76Q9H967 626 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 FSCN3Q9NQT6 498 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 PXMP2Q9NR77 195 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 HSPB8Q9UJY1 196 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 VPREB3Q9UKI3 123 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 BOKQ9UMX3 212 aaPredicted RBP4.76□□□□□ -1.65
CD44-236ENST00000533222 GPR132Q9UNW8 380 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 FUT9Q9Y231 359 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 HS3ST2Q9Y278 367 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 CSDC2Q9Y534 153 aaKnown RBP4.76□□□□□ -1.65
CD44-236ENST00000533222 STRCP1A6NGW2 1772 aa4.76□□□□□ -1.65
CD44-236ENST00000533222 LOC100509620A0A075B734 347 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 CENPVL3A0A0U1RRI6 287 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 A0A1B0GU03 582 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 A0A1B0GX51 115 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 A0A1W2PPV9 198 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 A0A1W2PQF6 199 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 IGLC7A0M8Q6 106 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 LRRC3CA6NJW4 275 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 M0QXV9 152 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 SIRPB1O00241 398 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 PHF1O43189 567 aaPredicted RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 DHHO43323 396 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 GNG7O60262 68 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 GRAP2O75791 330 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 UTS2O95399 124 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 ETHE1O95571 254 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 HLA-AP01891 365 aaKnown RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 ORM1P02763 201 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 TRGC2P03986 189 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 CTSDP07339 412 aaPredicted RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 IL3P08700 152 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 OR4A8P0C604 315 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 NHLRC4P0CG21 123 aaPredicted RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 UNGP13051 313 aaPredicted RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 CD99P14209 185 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 ELK1P19419 428 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 EVI2AP22794 236 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 CA7P43166 264 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 OR3A4PP47883 348 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 TCL1AP56279 114 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 TLE3Q04726 772 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 PLCXD2Q0VAA5 305 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 TAF13Q15543 124 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 TIMM23BQ5SRD1 257 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 PODNL1Q6PEZ8 512 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 C12orf54Q6X4T0 127 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 TMEM182Q6ZP80 229 aaPredicted RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 Q6ZS92 163 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 Q6ZSR6 202 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 Q6ZTK2 550 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 LRP11Q86VZ4 500 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 BLIDQ8IZY5 108 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 DEFB125Q8N687 156 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 ARIH2OSQ8N7S6 290 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 C5orf17Q8NAS9 161 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 ST6GALNAC3Q8NDV1 305 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 ZNF548Q8NEK5 533 aaPredicted RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 OR9G4Q8NGQ1 327 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 OR52P1PQ8NH57 321 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 C16orf52Q8NHV5 167 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 DCUN1D4Q92564 292 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 DAZLQ92904 295 aaKnown RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 RAB8BQ92930 207 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 OR10C1Q96KK4 312 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 DNAJC30Q96LL9 226 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 IP6K3Q96PC2 410 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 SEPHS2Q99611 448 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 HSPB9Q9BQS6 159 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 LRRC61Q9BV99 259 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 SCRT1Q9BWW7 348 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 MAP1LC3CQ9BXW4 147 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 FGFBP2Q9BYJ0 223 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 NMNAT2Q9BZQ4 307 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 POLR2J2Q9GZM3 115 aaKnown RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 S1PR5Q9H228 398 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 PARLQ9H300 379 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 FZD8Q9H461 694 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 PLAC1Q9HBJ0 212 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 FGF20Q9NP95 211 aaPredicted RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 GPR84Q9NQS5 396 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 TMEM106BQ9NUM4 274 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms