RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RNFT2Q96EX2 444 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 ADAT3Q96EY9 351 aaPredicted RBP11.87□□□□□ -0.51
VPS28-215ENST00000531924 OPALINQ96PE5 141 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 IL36RNQ9UBH0 155 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 HHLA2Q9UM44 414 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 GSTK1Q9Y2Q3 226 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 TOR1AO14656 332 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 SLC16A6O15403 523 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 PSPNO60542 156 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 ENTPD6O75354 484 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 ISG15P05161 165 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 BLCAPP62952 87 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 PDZK1IP1Q13113 114 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 ZNF146Q15072 292 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 SAMD5Q5TGI4 173 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 TCF23Q7RTU1 214 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 ABHD12Q8N2K0 398 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 ZNF596Q8TC21 504 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 RFT1Q96AA3 541 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 CITED2Q99967 270 aaPredicted RBP11.86□□□□□ -0.51
VPS28-215ENST00000531924 HMG20AQ9NP66 347 aa11.86□□□□□ -0.51
VPS28-215ENST00000531924 IGKV1-9A0A0C4DH69 117 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 J3QLW9 94 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 PRB2P02812 416 aaPredicted RBP11.85□□□□□ -0.51
VPS28-215ENST00000531924 ZNF44P15621 663 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 ZNF19P17023 458 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 JUNBP17275 347 aaPredicted RBP11.85□□□□□ -0.51
VPS28-215ENST00000531924 CDK2P24941 298 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 ERP29P30040 261 aaKnown RBP11.85□□□□□ -0.51
VPS28-215ENST00000531924 OR3A1P47881 315 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 ISL1P61371 349 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 FBLN7Q53RD9 439 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 LDLRAD2Q5SZI1 272 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 PRAMEF5Q5TYX0 476 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 MEDAGQ5VYS4 303 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 CENPVQ7Z7K6 275 aaPredicted RBP11.85□□□□□ -0.51
VPS28-215ENST00000531924 RTN4RL2Q86UN3 420 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 ACBD7Q8N6N7 88 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 CREB3L1Q96BA8 519 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 MMP28Q9H239 520 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 FRRS1LQ9P0K9 344 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.85□□□□□ -0.51
VPS28-215ENST00000531924 DPM3Q9P2X0 92 aa11.85□□□□□ -0.51
VPS28-215ENST00000531924 A0A1W2PRX2 142 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 LEUTXA8MZ59 168 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 PIN1P1O15428 100 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 OR2H2O95918 312 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 HCKP08631 526 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 CEACAM3P40198 252 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 CCR9P51686 369 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 KPRPQ5T749 579 aaPredicted RBP11.84□□□□□ -0.51
VPS28-215ENST00000531924 C16orf82Q7Z2V1 217 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 OR5AU1Q8NGC0 362 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 OR4D6Q8NGJ1 314 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 OR5D18Q8NGL1 313 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 OR13C9Q8NGT0 318 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 MBOAT4Q96T53 435 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 ING3Q9NXR8 418 aa11.84□□□□□ -0.51
VPS28-215ENST00000531924 DEGS1O15121 323 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 RPSAP08865 295 aaKnown RBP11.83□□□□□ -0.52
VPS28-215ENST00000531924 TMEM225BP0DP42 221 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 PF4V1P10720 104 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 CD33P20138 364 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 PTGFRP43088 359 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 PRRX1P54821 245 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 NANOS3P60323 173 aaKnown RBP11.83□□□□□ -0.52
VPS28-215ENST00000531924 BDH1Q02338 343 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 AESQ08117 197 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 TMEM95Q3KNT9 176 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 ZIK1Q3SY52 487 aaPredicted RBP11.83□□□□□ -0.52
VPS28-215ENST00000531924 OXLD1Q5BKU9 147 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 KRBOX4Q5JUW0 171 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 FDX2Q6P4F2 183 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 HEPN1Q6WQI6 88 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 CHST4Q8NCG5 386 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 OR4P4Q8NGL7 312 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 PYDC1Q8WXC3 89 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 C4orf36Q96KX1 117 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 SPACA5Q96QH8 159 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 WNT10AQ9GZT5 417 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 ZCCHC4Q9H5U6 513 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 RHOFQ9HBH0 211 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 TAS2R3Q9NYW6 316 aa11.83□□□□□ -0.52
VPS28-215ENST00000531924 ODAMA1E959 279 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 FAM172BPA6NC97 362 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 FAM90A22PA8MWA6 464 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 MMP23AO75900 390 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 KDM4BO94953 1096 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 MT-ND2P03891 347 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 CD24P25063 80 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 MNDAP41218 407 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 GLIPR1P48060 266 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 SNRPGP62308 76 aaKnown RBP11.82□□□□□ -0.52
VPS28-215ENST00000531924 ALKBH1Q13686 389 aaKnown RBP11.82□□□□□ -0.52
VPS28-215ENST00000531924 RBM39Q14498 530 aaKnown RBP11.82□□□□□ -0.52
VPS28-215ENST00000531924 SLC25A30Q5SVS4 291 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 CCDC144NLQ6NUI1 221 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 Q6ZS46 218 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 SAXO1Q8IYX7 474 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 OR5D14Q8NGL3 314 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms