RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 IL13RA2Q14627 380 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 MITD1Q8WV92 249 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 TMEM230Q96A57 120 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 RTBDNQ9BSG5 229 aaPredicted RBP17.62■□□□□ 0.41
VPS28-209ENST00000528142 PIGMQ9H3S5 423 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 TMEM100Q9NV29 134 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 Q9UFV3 132 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 OPN4Q9UHM6 478 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 TINAGQ9UJW2 476 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 ITPR1Q14643 2758 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 GSTT2P0CG29 244 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 AKR1C4P17516 323 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 BMP5P22003 454 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 DUSP1P28562 367 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 CD34P28906 385 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 ZNF83P51522 516 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 ERVK11-1P61568 191 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 IL13RA1P78552 427 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 ZNF154Q13106 437 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 SURF2Q15527 256 aaPredicted RBP17.61■□□□□ 0.41
VPS28-209ENST00000528142 OR8G1Q15617 311 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 ZNF718Q3SXZ3 478 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 LY6G6FQ5SQ64 297 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 GRPEL2Q8TAA5 225 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 PRORYQ9H606 182 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 DECR2Q9NUI1 292 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 TLN1Q9Y490 2541 aaKnown RBP17.61■□□□□ 0.41
VPS28-209ENST00000528142 MLNRO43193 412 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 OR5H8P0DN80 308 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 SNRPD2P62316 118 aaKnown RBP17.61■□□□□ 0.41
VPS28-209ENST00000528142 FAM27E3Q08E93 113 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 IKZF1Q13422 519 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 TMEM128Q5BJH2 165 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 DHRS11Q6UWP2 260 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 ASCC1Q8N9N2 400 aaKnown RBP17.61■□□□□ 0.41
VPS28-209ENST00000528142 LIME1Q9H400 295 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 NECAP2Q9NVZ3 263 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 TUBD1Q9UJT1 453 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 POLDIP2Q9Y2S7 368 aa17.61■□□□□ 0.41
VPS28-209ENST00000528142 TMEM210A6NLX4 147 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 C3orf80F5H4A9 247 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 F5H5P2 479 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 NAPSAO96009 420 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 FABP6P51161 128 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 KDF1Q8NAX2 398 aaPredicted RBP17.6■□□□□ 0.41
VPS28-209ENST00000528142 ASB13Q8WXK3 278 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 MUCL1Q96DR8 90 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 ZNF2Q9BSG1 426 aaPredicted RBP17.6■□□□□ 0.41
VPS28-209ENST00000528142 GON7Q9BXV9 100 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 SLA2Q9H6Q3 261 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 IFT22Q9H7X7 185 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 ZNF286AQ9HBT8 521 aa17.6■□□□□ 0.41
VPS28-209ENST00000528142 A0A1B0GWJ7 208 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 DUS4LO95620 317 aaKnown RBP17.59■□□□□ 0.41
VPS28-209ENST00000528142 HLA-GP17693 338 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 BAMBIQ13145 260 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 SRSF7Q16629 238 aaKnown RBP eCLIP17.59■□□□□ 0.41
VPS28-209ENST00000528142 C1QTNF12Q5T7M4 302 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 SLC22A25Q6T423 547 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 Q6ZR03 302 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 Q6ZS49 121 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 MRGPRGQ86SM5 289 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 NRIP2Q9BQI9 281 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 SPACA1Q9HBV2 294 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 FZR1Q9UM11 496 aa17.59■□□□□ 0.41
VPS28-209ENST00000528142 EEF1E1-BLOC1S5C9J1V9 151 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 M0R1B8 84 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 CDIPTO14735 213 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 TIMM8AO60220 97 aaPredicted RBP17.58■□□□□ 0.41
VPS28-209ENST00000528142 PGA5P0DJD9 388 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 PPP3CBP16298 524 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 PI3P19957 117 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 VAMP1P23763 118 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 GCH1P30793 250 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 Q8IYB0 196 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 SUMF2Q8NBJ7 301 aa17.58■□□□□ 0.41
VPS28-209ENST00000528142 TRAV24A0A0B4J272 114 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 MCRIP1C9JLW8 97 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 GLAP06280 429 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 ACAA1P09110 424 aaPredicted RBP17.58■□□□□ 0.4
VPS28-209ENST00000528142 GLRA1P23415 457 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 ECI1P42126 302 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 SRSF4Q08170 494 aaKnown RBP17.58■□□□□ 0.4
VPS28-209ENST00000528142 MSMPQ1L6U9 139 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 LGALSLQ3ZCW2 172 aaPredicted RBP17.58■□□□□ 0.4
VPS28-209ENST00000528142 Q6P435 159 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 C11orf88Q6PI97 169 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 C22orf34Q6ZV56 151 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 NCCRP1Q6ZVX7 275 aaPredicted RBP17.58■□□□□ 0.4
VPS28-209ENST00000528142 C11orf53Q8IXP5 236 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 NBEAQ8NFP9 2946 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 OR5M8Q8NGP6 311 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 GTF3AQ92664 365 aaKnown RBP17.58■□□□□ 0.4
VPS28-209ENST00000528142 PHB2Q99623 299 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 CXXC4Q9H2H0 198 aa17.58■□□□□ 0.4
VPS28-209ENST00000528142 RGS11O94810 467 aa17.57■□□□□ 0.4
VPS28-209ENST00000528142 SFT2D2O95562 160 aa17.57■□□□□ 0.4
VPS28-209ENST00000528142 SUPT4H1P63272 117 aaKnown RBP17.57■□□□□ 0.4
VPS28-209ENST00000528142 LPCAT3Q6P1A2 487 aa17.57■□□□□ 0.4
VPS28-209ENST00000528142 CASTOR1Q8WTX7 329 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms