RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 MUC15Q8N387 334 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 OR4S1Q8NGB4 309 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 OR4C16Q8NGL9 310 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 ST6GALNAC5Q9BVH7 336 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 CACNG6Q9BXT2 260 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 EGLN1Q9GZT9 426 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 MMP28Q9H239 520 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 DECR2Q9NUI1 292 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 RAB3DO95716 219 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 CD74P04233 296 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 NAT1P18440 290 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 CCL8P80075 99 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 TESK1Q15569 626 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 PLA1AQ53H76 456 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 SFRP4Q6FHJ7 346 aaPredicted RBP17.72■□□□□ 0.43
VPS28-208ENST00000527797 OR52W1Q6IF63 320 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 SUMF2Q8NBJ7 301 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 OR11L1Q8NGX0 322 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 GCM1Q9NP62 436 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 ZNF701Q9NV72 531 aaPredicted RBP17.72■□□□□ 0.43
VPS28-208ENST00000527797 SRRM5B3KS81 715 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 HS3ST1O14792 307 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 OR2H2O95918 312 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 RBM39Q14498 530 aaKnown RBP17.72■□□□□ 0.43
VPS28-208ENST00000527797 SWI5Q1ZZU3 235 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 FAAP20Q6NZ36 180 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 GLCCI1Q86VQ1 547 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 ZCCHC24Q8N2G6 241 aaKnown RBP17.72■□□□□ 0.43
VPS28-208ENST00000527797 Q8TCH9 128 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 NEK7Q8TDX7 302 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 DYRK2Q92630 601 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 RDH5Q92781 318 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 HDHD3Q9BSH5 251 aaPredicted RBP17.72■□□□□ 0.43
VPS28-208ENST00000527797 COPZ2Q9P299 210 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 RNF7Q9UBF6 113 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 OR14J1Q9UGF5 321 aa17.72■□□□□ 0.43
VPS28-208ENST00000527797 TRAV24A0A0B4J272 114 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 HAND1O96004 215 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 KNG1P01042 644 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 TBPP20226 339 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 DTYMKP23919 212 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 CCR6P51684 374 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 SNRPD2P62316 118 aaKnown RBP17.71■□□□□ 0.43
VPS28-208ENST00000527797 ZNF782Q6ZMW2 699 aaPredicted RBP17.71■□□□□ 0.43
VPS28-208ENST00000527797 FAM90A1Q86YD7 464 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 GCSAMQ8N6F7 178 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 BOLLQ8N9W6 283 aaKnown RBP17.71■□□□□ 0.43
VPS28-208ENST00000527797 OR4D10Q8NGI6 311 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 DPCDQ9BVM2 203 aaPredicted RBP17.71■□□□□ 0.43
VPS28-208ENST00000527797 CHST6Q9GZX3 395 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 C12orf4Q9NQ89 552 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 ZNF230Q9UIE0 474 aaPredicted RBP17.71■□□□□ 0.43
VPS28-208ENST00000527797 PPP1R3CQ9UQK1 317 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 EPG5Q9HCE0 2579 aa17.71■□□□□ 0.43
VPS28-208ENST00000527797 M0QYG6 137 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 SIRPB1O00241 398 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 HSPB6O14558 160 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 LHBP01229 141 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 EGR1P18146 543 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 MEF2DQ14814 521 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 RNASE10Q5GAN6 216 aaKnown RBP17.7■□□□□ 0.42
VPS28-208ENST00000527797 BPIFB2Q8N4F0 458 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 BEST4Q8NFU0 473 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 OR4K15Q8NH41 348 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 SNAPC3Q92966 411 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 TINAGL1Q9GZM7 467 aaPredicted RBP17.7■□□□□ 0.42
VPS28-208ENST00000527797 SAP30LQ9HAJ7 183 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 EDARQ9UNE0 448 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 NPTNQ9Y639 398 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 CFAP46Q8IYW2 2715 aa17.7■□□□□ 0.42
VPS28-208ENST00000527797 TCRBP04435 133 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 FCGR3AP08637 254 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 IRF2P14316 349 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 AMY2BP19961 511 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 HOXA4Q00056 320 aaPredicted RBP17.69■□□□□ 0.42
VPS28-208ENST00000527797 ACTBL2Q562R1 376 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 PAN3Q58A45 887 aaKnown RBP17.69■□□□□ 0.42
VPS28-208ENST00000527797 MEX3BQ6ZN04 569 aaKnown RBP17.69■□□□□ 0.42
VPS28-208ENST00000527797 OR56B4Q8NH76 319 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 MAFIPQ8WZ33 124 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 HPS1Q92902 700 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 CHMP1AQ9HD42 196 aaPredicted RBP17.69■□□□□ 0.42
VPS28-208ENST00000527797 FAIMQ9NVQ4 179 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 ETAA1Q9NY74 926 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 DNAJB11Q9UBS4 358 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 FAM221AA4D161 298 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 DISC1C4P0D8 188 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 PYCARD-AS1I3L0S3 204 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 SLC33A1O00400 549 aaPredicted RBP17.69■□□□□ 0.42
VPS28-208ENST00000527797 HRH1P35367 487 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 RSBN1Q5VWQ0 802 aaPredicted RBP17.69■□□□□ 0.42
VPS28-208ENST00000527797 CREB3L1Q96BA8 519 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 RIMS4Q9H426 269 aaPredicted RBP17.69■□□□□ 0.42
VPS28-208ENST00000527797 WIPI2Q9Y4P8 454 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 KLF2Q9Y5W3 355 aaPredicted RBP17.69■□□□□ 0.42
VPS28-208ENST00000527797 NUBP2Q9Y5Y2 271 aa17.69■□□□□ 0.42
VPS28-208ENST00000527797 RFPL4AA6NLU0 287 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 LRRC30A6NM36 301 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 RFPL4AL1F8VTS6 287 aa17.68■□□□□ 0.42
VPS28-208ENST00000527797 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 165.9 ms