RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ZNF561Q8N587 486 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 JAGN1Q8N5M9 183 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 TMEM185AQ8NFB2 350 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 OR13F1Q8NGS4 319 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 SDSLQ96GA7 329 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 ELL3Q9HB65 397 aaPredicted RBP8.38□□□□□ -1.07
VPS28-204ENST00000526054 RBFOX1Q9NWB1 397 aaKnown RBP8.38□□□□□ -1.07
VPS28-204ENST00000526054 NDUFA13Q9P0J0 144 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 SLC25A10Q9UBX3 287 aaPredicted RBP8.38□□□□□ -1.07
VPS28-204ENST00000526054 SF3B6Q9Y3B4 125 aaKnown RBP8.38□□□□□ -1.07
VPS28-204ENST00000526054 IGKV1-12A0A0C4DH73 117 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 A0A1B0GW55 424 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DPPA5A6NC42 116 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 F8VVB4 439 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 F8VWA3 439 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 NOL3O60936 208 aaKnown RBP8.37□□□□□ -1.07
VPS28-204ENST00000526054 IGKV1D-12P01611 117 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 CHRM2P08172 466 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DUX4L2P0CJ85 424 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DUX4L3P0CJ86 424 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DUX4L4P0CJ87 422 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DUX4L5P0CJ88 424 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DUX4L6P0CJ89 424 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DUX4L7P0CJ90 424 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 NDUFB7P17568 137 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 AMY2BP19961 511 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 PRDX2P32119 198 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 PTGFRP43088 359 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 OR3A4PP47883 348 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 NPBWR2P48146 333 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 MTNR1BP49286 362 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 CAPZA1P52907 286 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 FABP5Q01469 135 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 RSU1Q15404 277 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DGUOKQ16854 277 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 FAM27D1Q5T7N8 215 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 GLT8D1Q68CQ7 371 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 CRIP3Q6Q6R5 217 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DUX4L9Q6RFH8 374 aaPredicted RBP8.37□□□□□ -1.07
VPS28-204ENST00000526054 C9orf139Q6ZV77 190 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 RNF144BQ7Z419 303 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 CD177Q8N6Q3 437 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 RAB40AQ8WXH6 277 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 UPRTQ96BW1 309 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 FOXRED1Q96CU9 486 aaPredicted RBP8.37□□□□□ -1.07
VPS28-204ENST00000526054 NUDT16L1Q9BRJ7 211 aaKnown RBP8.37□□□□□ -1.07
VPS28-204ENST00000526054 METTL9Q9H1A3 318 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 HMG20AQ9NP66 347 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 PCDHB16Q9NRJ7 776 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 DUX4Q9UBX2 424 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 ING4Q9UNL4 249 aa8.37□□□□□ -1.07
VPS28-204ENST00000526054 PRKDCP78527 4128 aaKnown RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 MDFIC2A0A1B0GVS7 189 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 TRDV1A0A1B0GX56 115 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 A6NHS1 94 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 C22orf46C9J442 243 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 ZNF780AO75290 641 aaPredicted RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 HAND1O96004 215 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 CSTBP04080 98 aaKnown RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 TFF1P04155 84 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 SFTPBP07988 381 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 SELLP14151 372 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 SRMP19623 302 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 GALP22466 123 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 MYL9P24844 172 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 CEBPDP49716 269 aaPredicted RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 SNU13P55769 128 aaKnown RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 CAV3P56539 151 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 FGF12P61328 243 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 PAX2Q02962 417 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 GPR176Q14439 515 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 ZNF146Q15072 292 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 AWAT2Q6E213 333 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 ELP2Q6IA86 826 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 TREML4Q6UXN2 200 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 ASCL4Q6XD76 172 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 TMEM91Q6ZNR0 172 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 BTN2A1Q7KYR7 527 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 ASCC1Q8N9N2 400 aaKnown RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 ZNRF1Q8ND25 227 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 PPP1R35Q8TAP8 253 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 H1FXQ92522 213 aaKnown RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 DACT3Q96B18 629 aaPredicted RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 NKX3-1Q99801 234 aaPredicted RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 UQCC2Q9BRT2 126 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 FAM234AQ9H0X4 552 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 SEBOXQ9HB31 216 aaPredicted RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 EXOSC4Q9NPD3 245 aaKnown RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 IL36GQ9NZH8 169 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 STUB1Q9UNE7 303 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 GSTK1Q9Y2Q3 226 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 MRPS28Q9Y2Q9 187 aaKnown RBP8.36□□□□□ -1.07
VPS28-204ENST00000526054 MAB21L2Q9Y586 359 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 TGP01266 2768 aa8.36□□□□□ -1.07
VPS28-204ENST00000526054 TRBV23-1A0A0A0MS06 115 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 KIR2DS1A0A191URI9 304 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 CCDC160A6NGH7 325 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 POM121CA8CG34 1229 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 SH2D1BO14796 132 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 HOXA3O43365 443 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms