RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 RDH14Q9HBH5 336 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 DYSFO75923 2080 aa4.24□□□□□ -1.73
NUP54-215ENST00000514313 BAZ2AQ9UIF9 1905 aaKnown RBP4.24□□□□□ -1.73
NUP54-215ENST00000514313 LOXHD1Q8IVV2 1947 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 F8VZ95 297 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 CRXO43186 299 aaPredicted RBP4.23□□□□□ -1.73
NUP54-215ENST00000514313 CXorf1O96002 111 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 SKP1P63208 163 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 TMEM241Q24JQ0 296 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 TMEM249Q2WGJ8 235 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 FAM104BQ5XKR9 115 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 SLC25A34Q6PIV7 304 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 NEGR1Q7Z3B1 354 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 ACBD4Q8NC06 268 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 LINC01587Q99440 93 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 TAPBPLQ9BX59 468 aa4.23□□□□□ -1.73
NUP54-215ENST00000514313 A0A1B0GTI1 187 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 A0A1W2PRG6 482 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 MYBPHLA2RUH7 354 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 COX7A2P2O60397 106 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 CDK14O94921 469 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 IGHV1-46P01743 117 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 LIMS3P0CW19 117 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 LIMS4P0CW20 117 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 IMPA1P29218 277 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 SLC6A1P30531 599 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 PMELP40967 661 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 CRATP43155 626 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 HMGN2P46Q86SG4 172 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 CRLF3Q8IUI8 442 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 H1FOOQ8IZA3 346 aaPredicted RBP4.22□□□□□ -1.73
NUP54-215ENST00000514313 OR2K2Q8NGT1 345 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 YPEL4Q96NS1 127 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 LLPHQ9BRT6 129 aaKnown RBP4.22□□□□□ -1.73
NUP54-215ENST00000514313 ZNF436Q9C0F3 470 aaPredicted RBP4.22□□□□□ -1.73
NUP54-215ENST00000514313 TMEM38BQ9NVV0 291 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 TAC3Q9UHF0 121 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 ZNF780BQ9Y6R6 833 aa4.22□□□□□ -1.73
NUP54-215ENST00000514313 A0A1W2PNU3 283 aaPredicted RBP4.21□□□□□ -1.74
NUP54-215ENST00000514313 PGPA6NDG6 321 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 OR5AC1P0C628 307 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 PRTN3P24158 256 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 MPV17P39210 176 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 TGM4P49221 684 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 MAP3K7CLP57077 242 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 LAMTOR1Q6IAA8 161 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 GLYATQ6IB77 296 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 ZNF773Q6PK81 442 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 TBPL2Q6SJ96 375 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 FAM131AQ6UXB0 335 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 DAZ4Q86SG3 579 aaKnown RBP4.21□□□□□ -1.74
NUP54-215ENST00000514313 C10orf107Q8IVU9 208 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 GATD1Q8NB37 220 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 APCDD1LQ8NCL9 501 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 FXYD5Q96DB9 178 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 PPP1R36Q96LQ0 422 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 FAM210AQ96ND0 272 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 HBEGFQ99075 208 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 UPF3BQ9BZI7 483 aaKnown RBP4.21□□□□□ -1.74
NUP54-215ENST00000514313 TSGA10Q9BZW7 698 aa4.21□□□□□ -1.74
NUP54-215ENST00000514313 DAZ1Q9NQZ3 744 aaKnown RBP4.21□□□□□ -1.74
NUP54-215ENST00000514313 IZUMO1RA6ND01 250 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 CD300LBA8K4G0 201 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 MPZL2O60487 215 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 PDCD6O75340 191 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 SLC2A1P11166 492 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 ZNF35P13682 527 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 PSMB9P28065 219 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 PSMB6P28072 239 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 IDH2P48735 452 aaKnown RBP4.2□□□□□ -1.74
NUP54-215ENST00000514313 PLTPP55058 493 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 CLEC18BQ6UXF7 455 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 DGAT2L6Q6ZPD8 337 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 FAM183BPQ6ZVS7 135 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 KLF14Q8TD94 323 aaPredicted RBP4.2□□□□□ -1.74
NUP54-215ENST00000514313 ITLN2Q8WWU7 325 aaPredicted RBP4.2□□□□□ -1.74
NUP54-215ENST00000514313 ZNF251Q9BRH9 671 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 ANAPC13Q9BS18 74 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 FAAP24Q9BTP7 215 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 THTPAQ9BU02 230 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 FBXL15Q9H469 300 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 METTL17Q9H7H0 456 aaPredicted RBP4.2□□□□□ -1.74
NUP54-215ENST00000514313 IL37Q9NZH6 218 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 PRO0461Q9UI25 63 aa4.2□□□□□ -1.74
NUP54-215ENST00000514313 IGHV3OR16-8A0A075B7F1 116 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 TRAV8-3A0A0A6YYJ7 113 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 C16orf90A8MZG2 172 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 GOLGA8RI6L899 631 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 CNMDO75829 334 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 CA2P00918 260 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 LY6EQ16553 131 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 C16orf47Q6ZP98 133 aaPredicted RBP4.19□□□□□ -1.74
NUP54-215ENST00000514313 CD302Q8IX05 232 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 DYNC2LI1Q8TCX1 351 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 TWIST2Q8WVJ9 160 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 DDIT4LQ96D03 193 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 RHOFQ9HBH0 211 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 FAM60AQ9NP50 221 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 ASCL3Q9NQ33 180 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 C1orf109Q9NX04 203 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms