RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 SNX24Q9Y343 169 aa1.11□□□□□ -2.23
CPSF3-205ENST00000489629 LOC389332A0A1B0GUA5 103 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 GOLGA6L4A6NEF3 574 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 OR6C70A6NIJ9 312 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 OR2AT4A6NND4 320 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 RNASEK-C17orf49H0YIS7 233 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 H3BP45 60 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 ISLRO14498 428 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 OR2A4O95047 310 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 OR4Q2P0C623 313 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 OR5AC1P0C628 307 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 RD3LP0DJH9 198 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 INAFM2P0DMQ5 153 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 TSPOP30536 169 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 TGFBR2P37173 567 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 LGALS7P47929 136 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 CD151P48509 253 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 DNASE1L1P49184 302 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 TUFMP49411 452 aaKnown RBP1.1□□□□□ -2.23
CPSF3-205ENST00000489629 PSMB2P49721 201 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 RAB38P57729 211 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 VSNL1P62760 191 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 DMTNQ08495 405 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 SLAMF1Q13291 335 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 PMS2P3Q13401 168 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 ZNF235Q14590 738 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 TRAM1Q15629 374 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 Q499Y3 187 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 OR10J3Q5JRS4 329 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 THOC7Q6I9Y2 204 aaKnown RBP1.1□□□□□ -2.23
CPSF3-205ENST00000489629 TRMT10CQ7L0Y3 403 aaKnown RBP1.1□□□□□ -2.23
CPSF3-205ENST00000489629 SGPP2Q8IWX5 399 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 BOD1L2Q8IYS8 172 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 SYCE1Q8N0S2 351 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 ZDHHC22Q8N966 263 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 OR8G5Q8NG78 346 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 UBA3Q8TBC4 463 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 BLNKQ8WV28 456 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 ITLN2Q8WWU7 325 aaPredicted RBP1.1□□□□□ -2.23
CPSF3-205ENST00000489629 YIPF6Q96EC8 236 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 ATP6V1G3Q96LB4 118 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 RILPQ96NA2 401 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 BIRC8Q96P09 236 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 SERPINB11Q96P15 392 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 CATSPER2Q96P56 530 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 OR2A7Q96R45 310 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 LINC01587Q99440 93 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 VAT1Q99536 393 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 MRPL20Q9BYC9 149 aaKnown RBP1.1□□□□□ -2.23
CPSF3-205ENST00000489629 NXF2Q9GZY0 626 aaKnown RBP1.1□□□□□ -2.23
CPSF3-205ENST00000489629 MFSD1Q9H3U5 465 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 FBXL15Q9H469 300 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 FAM60AQ9NP50 221 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 INSIG2Q9Y5U4 225 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 CHD2O14647 1828 aaKnown RBP1.1□□□□□ -2.23
CPSF3-205ENST00000489629 LTBP2Q14767 1821 aa1.1□□□□□ -2.23
CPSF3-205ENST00000489629 SDK2Q58EX2 2172 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 A0A1B0GX12 115 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 MKRN2OSH3BPM6 223 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 PLPP3O14495 311 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 POLR3GO15318 223 aaPredicted RBP1.09□□□□□ -2.23
CPSF3-205ENST00000489629 GYG2O15488 501 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 SCN2BO60939 215 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 MYO1DO94832 1006 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 KCNK2O95069 426 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 LDOC1O95751 146 aaPredicted RBP1.09□□□□□ -2.23
CPSF3-205ENST00000489629 FADS2O95864 444 aaKnown RBP1.09□□□□□ -2.23
CPSF3-205ENST00000489629 SNRPAP09012 282 aaKnown RBP1.09□□□□□ -2.23
CPSF3-205ENST00000489629 GIMD1P0DJR0 217 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 CGB3P0DN86 165 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 CGB7P0DN87 165 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 HLA-DMAP28067 261 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 UGT2B10P36537 528 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 GCLMP48507 274 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 PLTPP55058 493 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 CD164Q04900 197 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 PRKCDQ05655 676 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 ELOCQ15369 112 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 SSX1Q16384 188 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 BSXQ3C1V8 233 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 CEACAM21Q3KPI0 293 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 MRPL2Q5T653 305 aaKnown RBP1.09□□□□□ -2.23
CPSF3-205ENST00000489629 IDNKQ5T6J7 187 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 HBMQ6B0K9 141 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 ZFAND6Q6FIF0 208 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 ZNF773Q6PK81 442 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 FAM231DQ6ZW35 169 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 FA2HQ7L5A8 372 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 GALNT10Q86SR1 603 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 GATD1Q8NB37 220 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 OR4K17Q8NGC6 315 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 OR51Q1Q8NH59 317 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 ACTL9Q8TC94 416 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 RNASEH2CQ8TDP1 164 aaKnown RBP1.09□□□□□ -2.23
CPSF3-205ENST00000489629 FAM210AQ96ND0 272 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 PEBP4Q96S96 227 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 SHANK2-AS3Q9BTD1 123 aa1.09□□□□□ -2.23
CPSF3-205ENST00000489629 API5Q9BZZ5 524 aaKnown RBP1.09□□□□□ -2.23
CPSF3-205ENST00000489629 WDR55Q9H6Y2 383 aaPredicted RBP1.09□□□□□ -2.23
CPSF3-205ENST00000489629 ABCB9Q9NP78 766 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms