RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MPC1Q9Y5U8 109 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 AP4M1O00189 453 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 SNCGO76070 127 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 PEBP1P30086 187 aaKnown RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 RAB7AP51149 207 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 HIST1H3AP68431 136 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 PNRC1Q12796 327 aaPredicted RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 PTPMT1Q8WUK0 201 aaPredicted RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 NOL4LQ96MY1 436 aaPredicted RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 FAM117AQ9C073 453 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 DCAF16Q9NXF7 216 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 MCM3APO60318 1980 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 SPINK4O60575 86 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 CD1AP06126 327 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 SCGB1C2P0DMR2 95 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 AMTP48728 403 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 HNRNPA3P51991 378 aaKnown RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 COTL1Q14019 142 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 NAT8BQ9UHF3 227 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 PCOLCE2Q9UKZ9 415 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 YBX2Q9Y2T7 364 aaKnown RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 SIRT4Q9Y6E7 314 aaPredicted RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 TRDCB7Z8K6 153 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 GOSR1O95249 250 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 EPHA8P29322 1005 aaPredicted RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 NHLRC2Q8NBF2 726 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 RNF133Q8WVZ7 376 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 SF3B5Q9BWJ5 86 aaKnown RBP14.51□□□□□ -0.09
COL7A1-210ENST00000487017 CA10Q9NS85 328 aa14.51□□□□□ -0.09
COL7A1-210ENST00000487017 MYO7AQ13402 2215 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 TMIGD3P0DMS9 266 aaPredicted RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 ETV3LQ6ZN32 361 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 NUFIP2Q7Z417 695 aaKnown RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 NEIL1Q96FI4 390 aaPredicted RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 ELF5Q9UKW6 265 aaPredicted RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 ZMIZ1Q9ULJ6 1067 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 LIPGQ9Y5X9 500 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 COL13A1Q5TAT6 717 aaPredicted RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 ADAD2Q8NCV1 583 aaKnown RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 RASL10BQ96S79 203 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 GPR27Q9NS67 375 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 GNG4P50150 75 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 EFNB2P52799 333 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 Q56UQ5 140 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 CBLN2Q8IUK8 224 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 LYG1Q8N1E2 194 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 VSIG8P0DPA2 414 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 ACAA2P42765 397 aaKnown RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 RPS4XP62701 263 aaKnown RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 ZNF345Q14585 488 aa14.5□□□□□ -0.09
COL7A1-210ENST00000487017 ZMAT5Q9UDW3 170 aaKnown RBP14.5□□□□□ -0.09
COL7A1-210ENST00000487017 TRAV17A0A0B4J275 112 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 OPN1MWP04001 364 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 OPN1MW2P0DN77 364 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 OPN1MW3P0DN78 364 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 USF1P22415 310 aaPredicted RBP14.49□□□□□ -0.09
COL7A1-210ENST00000487017 PRSS12P56730 875 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 RHOBP62745 196 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 GFRALQ6UXV0 394 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 RSRP1Q9BUV0 290 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 WNT16Q9UBV4 365 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 NAT8Q9UHE5 227 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 DOCK5Q9H7D0 1870 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 LY75O60449 1722 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 GEMIN2O14893 280 aaKnown RBP14.49□□□□□ -0.09
COL7A1-210ENST00000487017 CHRNA7P36544 502 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 OR3A1P47881 315 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 OR4D10Q8NGI6 311 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 CENPVL1A0A0U1RR11 272 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 OR2M5A3KFT3 312 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 CST2P09228 141 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 PAX5Q02548 391 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 MRPL24Q96A35 216 aaKnown RBP14.49□□□□□ -0.09
COL7A1-210ENST00000487017 MKRN2OSH3BPM6 223 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 J3QR89 54 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 C21orf62-AS1Q17RA5 79 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 FA2HQ7L5A8 372 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 MISP3Q96FF7 219 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 KIAA0100Q14667 2235 aaKnown RBP14.49□□□□□ -0.09
COL7A1-210ENST00000487017 IGHV3-43A0A0B4J1X8 118 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 A0A1W2PNV4 684 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 SYNGR2O43760 224 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 ARG1P05089 322 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 IGHV3-43DP0DP04 118 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 SPINK9Q5DT21 86 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 SLC36A1Q7Z2H8 476 aa14.49□□□□□ -0.09
COL7A1-210ENST00000487017 LRRC3CA6NJW4 275 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 FOXC1Q12948 553 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 EIF3IQ13347 325 aaKnown RBP14.48□□□□□ -0.09
COL7A1-210ENST00000487017 SLC16A13Q7RTY0 426 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 ZNF596Q8TC21 504 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 LRRC29Q8WV35 223 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 PRSS27Q9BQR3 290 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 DUXBA0A1W2PPF3 345 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 OPRK1P41145 380 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 PMS2P11Q13670 270 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 COL19A1Q14993 1142 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 RPEL1Q2QD12 228 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 TMEM52Q8NDY8 209 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 ZPLD1Q8TCW7 415 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms