RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 MTNR1BP49286 362 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 GABARAPL2P60520 117 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 BLMHQ13867 455 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 ZNF146Q15072 292 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 GRK1Q15835 563 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 ACSM3Q53FZ2 586 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 FAM27D1Q5T7N8 215 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 RBMS3Q6XE24 437 aaKnown RBP12.13□□□□□ -0.47
USP4-212ENST00000486549 C17orf107Q6ZR85 190 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 OR8H2Q8N162 312 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 JAGN1Q8N5M9 183 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 MS4A15Q8N5U1 240 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 Q8N7P7 452 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 PXT1Q8NFP0 134 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 THRSPQ92748 146 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 TMEM203Q969S6 136 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 SNX22Q96L94 193 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 S100A13Q99584 98 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 RHOFQ9HBH0 211 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 FOXJ3Q9UPW0 622 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 DSCAML1Q8TD84 2053 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 MDFIC2A0A1B0GVS7 189 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 M0R1W7 72 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 PSPNO60542 156 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 CCL3L1P16619 93 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 OR3A1P47881 315 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 HILS1P60008 231 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 RPS25P62851 125 aaKnown RBP12.12□□□□□ -0.47
USP4-212ENST00000486549 MLLT11Q13015 90 aaPredicted RBP12.12□□□□□ -0.47
USP4-212ENST00000486549 KLRD1Q13241 179 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 ZNF273Q14593 569 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 TBCEQ15813 527 aaPredicted RBP12.12□□□□□ -0.47
USP4-212ENST00000486549 TMEM200BQ69YZ2 307 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 ZNF367Q7RTV3 350 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 CEACAM19Q7Z692 300 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 TPRX1Q8N7U7 411 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 OR4S1Q8NGB4 309 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 OR5D13Q8NGL4 314 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 MUL1Q969V5 352 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 DMRTB1Q96MA1 342 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 ZNF48Q96MX3 618 aaPredicted RBP12.12□□□□□ -0.47
USP4-212ENST00000486549 MGLLQ99685 303 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 METTL9Q9H1A3 318 aa12.12□□□□□ -0.47
USP4-212ENST00000486549 IGHV1-69DA0A0B4J2H0 117 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 A0A1W2PPH5 198 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 A0A1W2PRD5 423 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 A0A1W2PRF3 423 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 A0A1W2PRM7 423 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 DEGS1O15121 323 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 IGHV1-69P01742 117 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 SERPINA2P20848 420 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 BMXP51813 675 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 GPR50Q13585 617 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 TPBGQ13641 420 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 PIGYQ3MUY2 71 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 C9orf139Q6ZV77 190 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 PPP1R35Q8TAP8 253 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 DUX5Q96PT3 197 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 PPA2Q9H2U2 334 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 METTL8Q9H825 291 aaKnown RBP12.11□□□□□ -0.47
USP4-212ENST00000486549 SEBOXQ9HB31 216 aaPredicted RBP12.11□□□□□ -0.47
USP4-212ENST00000486549 TCF7L1Q9HCS4 588 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 ISYNA1Q9NPH2 558 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 ACOT13Q9NPJ3 140 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 ING3Q9NXR8 418 aa12.11□□□□□ -0.47
USP4-212ENST00000486549 MRPS28Q9Y2Q9 187 aaKnown RBP12.11□□□□□ -0.47
USP4-212ENST00000486549 RNASEK-C17orf49H0YIS7 233 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 TRIM77I1YAP6 450 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 HSPB6O14558 160 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 MGST3O14880 152 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 CSTBP04080 98 aaKnown RBP12.1□□□□□ -0.47
USP4-212ENST00000486549 CPEP16870 476 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 BAMBIQ13145 260 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 DEFB112Q30KQ8 113 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 SLC22A6Q4U2R8 563 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 HSD17B12Q53GQ0 312 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 AWAT2Q6E213 333 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 ELP2Q6IA86 826 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 Q6P435 159 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 UNQ9370/PRO34162Q6UXP9 181 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 ASCL4Q6XD76 172 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 PNKDQ8N490 385 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 SVOPQ8N4V2 548 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 NKAIN3Q8N8D7 197 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 TBC1D15Q8TC07 691 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 ESM1Q9NQ30 184 aa12.1□□□□□ -0.47
USP4-212ENST00000486549 DNHD1Q96M86 4753 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 A0A0G2JK05 382 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 A0A1W2PP11 408 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 SLC33A1O00400 549 aaPredicted RBP12.09□□□□□ -0.47
USP4-212ENST00000486549 GP2P55259 537 aaKnown RBP12.09□□□□□ -0.47
USP4-212ENST00000486549 BPIFB3P59826 476 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 ERVFRD-1P60508 538 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 GUCA2AQ02747 115 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 EMX1Q04741 257 aaPredicted RBP12.09□□□□□ -0.47
USP4-212ENST00000486549 IL13RA2Q14627 380 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 ATXN7L3Q14CW9 347 aaPredicted RBP12.09□□□□□ -0.47
USP4-212ENST00000486549 NCR3LG1Q68D85 454 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 GLIPR1L1Q6UWM5 242 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 ZNF782Q6ZMW2 699 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms