RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SKA2Q8WVK7 121 aaPredicted RBP4.22□□□□□ -1.73
USP40-213ENST00000483216 LHX4Q969G2 390 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 SMIM19Q96E16 107 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ZNF514Q96K75 400 aaPredicted RBP4.22□□□□□ -1.73
USP40-213ENST00000483216 WFIKKN1Q96NZ8 548 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CCNL2Q96S94 520 aaPredicted RBP4.22□□□□□ -1.73
USP40-213ENST00000483216 CHIAQ9BZP6 476 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ATG5Q9H1Y0 275 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 RGCCQ9H4X1 137 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 RERGLQ9H628 205 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 TMEM185BQ9H7F4 350 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 SGK2Q9HBY8 427 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 IL17CQ9P0M4 197 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 LHX3Q9UBR4 397 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CKLFQ9UBR5 152 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 COPS7AQ9UBW8 275 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 MOKQ9UQ07 419 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 TMEM14AQ9Y6G1 99 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 TSC2P49815 1807 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 KCNE1BA0A087WTH5 132 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 BORCS7-ASMTA0A0B4J1R7 106 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 A0A0B4J2A0 478 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 OR51F1A6NGY5 319 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 SLC9B1P1A6NJY1 282 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 TMEM210A6NLX4 147 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 LINC00587B1AMM8 73 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 E7EQ34 232 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 H7C417 338 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 GFYI3L273 518 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 GOSR2O14653 212 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 NUPL2O15504 423 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 TAPBPO15533 448 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 LRATO95237 230 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CYB5AP00167 134 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CTSLP07711 333 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 RHOCP08134 193 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 METTL15P1P0C7V9 234 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 LINC00614P0C842 121 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CYBAP13498 195 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CCL5P13501 91 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 HIST1H1BP16401 226 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 HMGA1P17096 107 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 RCC1P18754 421 aaPredicted RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 SRMP19623 302 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CXCR1P25024 350 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CD34P28906 385 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 AQP1P29972 269 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 PRSS3P35030 304 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 MAS1LP35410 378 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 DLSTP36957 453 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CEACAM6P40199 344 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 OR1D4P47884 311 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 SRP9P49458 86 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 P2RY4P51582 365 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 OR10A3P58181 314 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 RANP62826 216 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 H3F3AP84243 136 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 FABP9Q0Z7S8 132 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 GANABQ14697 944 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 LASP1Q14847 261 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 PGGHGQ32M88 737 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 AKR1C8PQ5T2L2 129 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 RIPPLY2Q5TAB7 128 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 MFSD14CQ5VZR4 134 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 DPY19L2P2Q6ZN68 376 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 SLC35D2Q76EJ3 337 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 PUSL1Q8N0Z8 303 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 TMEM229BQ8NBD8 167 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 OR8G5Q8NG78 346 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 OR4K17Q8NGC6 315 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 SPRYD4Q8WW59 207 aaPredicted RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 NDRG1Q92597 394 aaKnown RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 DLX4Q92988 240 aaPredicted RBP4.21□□□□□ -1.74
USP40-213ENST00000483216 FBXO32Q969P5 355 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 PTX4Q96A99 478 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 TMEM45BQ96B21 275 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 TMEM159Q96B96 161 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 S100PBPQ96BU1 408 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 WDR34Q96EX3 536 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 DTD2Q96FN9 168 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CASD1Q96PB1 797 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 LYSMD1Q96S90 227 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 STACQ99469 402 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 SULT4A1Q9BR01 284 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 SLC17A9Q9BYT1 436 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 NMES1Q9C002 83 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 COMMD4Q9H0A8 199 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 OR51I1Q9H343 314 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 C1orf198Q9H425 327 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 CWH43Q9H720 699 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 APMAPQ9HDC9 416 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 PARP11Q9NR21 331 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 TMEM100Q9NV29 134 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 MARCH5Q9NX47 278 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 MTFP1Q9UDX5 166 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 SHPKQ9UHJ6 478 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 DKKL1Q9UK85 242 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 TNFSF18Q9UNG2 199 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 SLC35A3Q9Y2D2 325 aa4.21□□□□□ -1.74
USP40-213ENST00000483216 STRAPQ9Y3F4 350 aaKnown RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms