RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MEX3AA1L020 520 aaKnown RBP6.06□□□□□ -1.44
USP54-211ENST00000474929 MSGN1A6NI15 193 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 J3QL48 77 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 UBE2CO00762 179 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 MGST3O14880 152 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 MAGEB3O15480 346 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 SPRY2O43597 315 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 CD40LGP29965 261 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 PTGFRP43088 359 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 P2RX3P56373 397 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 STX1BP61266 288 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 PIN1Q13526 163 aaPredicted RBP6.06□□□□□ -1.44
USP54-211ENST00000474929 GRK1Q15835 563 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 AGKQ53H12 422 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 HSP90B2PQ58FF3 399 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 DPY19L2P2Q6ZN68 376 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 PTCHD4Q6ZW05 846 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 RRM2BQ7LG56 351 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 DCXRQ7Z4W1 244 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 FUNDC1Q8IVP5 155 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 DEFB125Q8N687 156 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 FAM86B1Q8N7N1 296 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 SGK3Q96BR1 496 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 SLAMF6Q96DU3 332 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 TSSK2Q96PF2 358 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 S1PR3Q99500 378 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 CCDC28BQ9BUN5 200 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 ALX4Q9H161 411 aaPredicted RBP6.06□□□□□ -1.44
USP54-211ENST00000474929 RANGRFQ9HD47 186 aaPredicted RBP6.06□□□□□ -1.44
USP54-211ENST00000474929 MBNL3Q9NUK0 354 aaKnown RBP6.06□□□□□ -1.44
USP54-211ENST00000474929 CCDC167Q9P0B6 97 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 SH3GLB1Q9Y371 365 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 FBXO7Q9Y3I1 522 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 MYCBP2O75592 4640 aa6.06□□□□□ -1.44
USP54-211ENST00000474929 HMCN2Q8NDA2 5059 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 TRAV41A0A0B4J266 112 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 DCTN6O00399 190 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 AIREO43918 545 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 EDF1O60869 148 aaKnown RBP6.05□□□□□ -1.44
USP54-211ENST00000474929 MOSP00540 346 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 IFNA14P01570 189 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 P0DMU3 169 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 FAM231AP0DMU4 169 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 FAM231CP0DMU5 169 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 ZNF816Q0VGE8 651 aaPredicted RBP6.05□□□□□ -1.44
USP54-211ENST00000474929 TRAM2Q15035 370 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 KLHL12Q53G59 568 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 BAIAP2L2Q6UXY1 529 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 KRT74Q7RTS7 529 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 NR2C2APQ86WQ0 139 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 ENTHD1Q8IYW4 607 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 OFCC1Q8IZS5 231 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 Q8N6K4 173 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 PGAM5Q96HS1 289 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 EAF1Q96JC9 268 aaPredicted RBP6.05□□□□□ -1.44
USP54-211ENST00000474929 HSPB9Q9BQS6 159 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 CST11Q9H112 138 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 SEBOXQ9HB31 216 aaPredicted RBP6.05□□□□□ -1.44
USP54-211ENST00000474929 SRA1Q9HD15 236 aaKnown RBP6.05□□□□□ -1.44
USP54-211ENST00000474929 CENPMQ9NSP4 180 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 DCAF13Q9NV06 445 aaKnown RBP6.05□□□□□ -1.44
USP54-211ENST00000474929 SLC25A37Q9NYZ2 338 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 PEMTQ9UBM1 199 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 CD300AQ9UGN4 299 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 SLC23A1Q9UHI7 598 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 APLNQ9ULZ1 77 aa6.05□□□□□ -1.44
USP54-211ENST00000474929 LRP1BQ9NZR2 4599 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 HSD17B6O14756 317 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 MMP23AO75900 390 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 ATP6V1B1P15313 513 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 CDKN2AP42771 156 aaKnown RBP6.04□□□□□ -1.44
USP54-211ENST00000474929 MAP2K3P46734 347 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 HAAOP46952 286 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 PAGE3Q5JUK9 113 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 DMRTA1Q5VZB9 504 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 FAM57BQ71RH2 274 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 ZNF645Q8N7E2 425 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 C11orf45Q8TAV5 145 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 TSPEARQ8WU66 669 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 CORO2AQ92828 525 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 TAMM41Q96BW9 452 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 SPDL1Q96EA4 605 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 MNTQ99583 582 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 FGF23Q9GZV9 251 aaPredicted RBP6.04□□□□□ -1.44
USP54-211ENST00000474929 SLA2Q9H6Q3 261 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 RPRD1BQ9NQG5 326 aaKnown RBP6.04□□□□□ -1.44
USP54-211ENST00000474929 FGFR1OP2Q9NVK5 253 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 FBXL17Q9UF56 701 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 SLC7A11Q9UPY5 501 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 FOXA2Q9Y261 457 aaPredicted RBP6.04□□□□□ -1.44
USP54-211ENST00000474929 IER3IP1Q9Y5U9 82 aa6.04□□□□□ -1.44
USP54-211ENST00000474929 FAM172BPA6NC97 362 aa6.03□□□□□ -1.44
USP54-211ENST00000474929 ZNF729A6NN14 1252 aaPredicted RBP6.03□□□□□ -1.44
USP54-211ENST00000474929 IGLL5B9A064 214 aa6.03□□□□□ -1.44
USP54-211ENST00000474929 J3QR06 171 aa6.03□□□□□ -1.44
USP54-211ENST00000474929 TXNL1O43396 289 aa6.03□□□□□ -1.44
USP54-211ENST00000474929 GAPDHP04406 335 aaKnown RBP6.03□□□□□ -1.44
USP54-211ENST00000474929 GABRR1P24046 479 aa6.03□□□□□ -1.44
USP54-211ENST00000474929 ACKR3P25106 362 aa6.03□□□□□ -1.44
USP54-211ENST00000474929 MPZP25189 248 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms