RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 HINT2Q9BX68 163 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 NECAP2Q9NVZ3 263 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 RFPL4AA6NLU0 287 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 RFPL4AL1F8VTS6 287 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 K7EPK0 472 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 FUT3P21217 361 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 MRPL49Q13405 166 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 AANATQ16613 207 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 SSX9Q7RTT3 188 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 SPICQ8N5J4 248 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 FAM71E2Q8N5Q1 922 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 APOBEC3DQ96AK3 386 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 KIRREL1Q96J84 757 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 B3GNT2Q9NY97 397 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 ERRFI1Q9UJM3 462 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 H0YL77 283 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 NME2P1O60361 137 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 MED6O75586 246 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 C1QL1O75973 258 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 OR2F2O95006 317 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 EIF2S3P41091 472 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 FGL1Q08830 312 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 TBC1D28Q2M2D7 210 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 FAM201AQ5SY85 155 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 RPL7L1Q6DKI1 246 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 RPUSD3Q6P087 351 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 SYT3Q9BQG1 590 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 C20orf24Q9BUV8 137 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 C12orf4Q9NQ89 552 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 CCL28Q9NRJ3 127 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 MEMO1Q9Y316 297 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 TRAV14DV4A0A0A6YYC5 116 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 SPRY3O43610 288 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 GCH1P30793 250 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 EIF3IQ13347 325 aaKnown RBP11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 FAM189A2Q15884 450 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 GGNBP1Q5YKI7 109 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 SPSB1Q96BD6 273 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 HEXA-AS1Q9H8Q6 139 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 RCL1Q9Y2P8 373 aaKnown RBP11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 A0A0U1RQV5 110 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 LDLRAD4O15165 306 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 SOX15O60248 233 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 CPN1P15169 458 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 OR8G1Q15617 311 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 AADACL3Q5VUY0 350 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 SLC51BQ86UW2 128 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 CISD2Q8N5K1 135 aaKnown RBP11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 TSNAXQ99598 290 aaKnown RBP11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 OR6C65A6NJZ3 312 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 PCP4L1A6NKN8 68 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 SERPINE3A8MV23 424 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 G3V3Q6 166 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 PDCD6O75340 191 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 SERPINE2P07093 398 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 FCGR3AP08637 254 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 CSRP1P21291 193 aaKnown RBP11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 SIGIRRQ6IA17 410 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 NANOS1Q8WY41 292 aaKnown RBP11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 C1orf147Q96MC9 270 aaPredicted RBP11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 DNTTIP1Q9H147 329 aa11.83□□□□□ -0.52
CCDC88A-211ENST00000471947 SSSCA1O60232 199 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 IAPPP10997 89 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 AKR1D1P51857 326 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 TAS2R31P59538 309 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 HIST3H3Q16695 136 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 FBXW9Q5XUX1 488 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 ZCCHC24Q8N2G6 241 aaKnown RBP11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 OR1S2Q8NGQ3 325 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 RFNGQ9Y644 331 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 ZZEF1O43149 2961 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 IGHV3OR15-7A0A075B7D8 119 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 NPIPB13A6NJU9 1138 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 NPIPB4C9JG80 1138 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 DUS4LO95620 317 aaKnown RBP11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 PRF1P14222 555 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 ZNF660Q6AZW8 331 aaPredicted RBP11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 OR2W3Q7Z3T1 314 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 ZNF610Q8N9Z0 462 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 OR2Z1Q8NG97 314 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 SFT2D2O95562 160 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 ACOT7LQ6ZUV0 252 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 STPG2Q8N412 459 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 ZADH2Q8N4Q0 377 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 PXT1Q8NFP0 134 aa11.82□□□□□ -0.52
CCDC88A-211ENST00000471947 A0A1B0GW55 424 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 H3BUI4 141 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 CRHP06850 196 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 DUX4L2P0CJ85 424 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 DUX4L3P0CJ86 424 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 DUX4L4P0CJ87 422 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 DUX4L5P0CJ88 424 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 DUX4L6P0CJ89 424 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 DUX4L7P0CJ90 424 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 ZNF708P17019 499 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 PPP1CBP62140 327 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 POLR2GP62487 172 aaKnown RBP eCLIP11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 QRFPP83859 136 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 HOGA1Q86XE5 327 aa11.81□□□□□ -0.52
CCDC88A-211ENST00000471947 ARRDC1Q8N5I2 433 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms