RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 TNFSF4P23510 183 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 LMO1P25800 156 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 SERPINF1P36955 418 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 HAAOP46952 286 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 OR3A4PP47883 348 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 SRP9P49458 86 aaKnown RBP4.62□□□□□ -1.67
VPS41-211ENST00000466017 TAS2R20P59543 309 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 ZNF154Q13106 437 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 ZNF146Q15072 292 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 P2RY14Q15391 338 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 SRSF7Q16629 238 aaKnown RBP eCLIP4.62□□□□□ -1.67
VPS41-211ENST00000466017 PCGF3Q3KNV8 242 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 ZNF672Q499Z4 452 aaPredicted RBP4.62□□□□□ -1.67
VPS41-211ENST00000466017 SPATA46Q5T0L3 261 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 SHEQ5VZ18 495 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 FAM131AQ6UXB0 335 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 RNF144BQ7Z419 303 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 LRP11Q86VZ4 500 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 CALHM1Q8IU99 346 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 OSR2Q8N2R0 312 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 ZNF611Q8N823 705 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 POC1AQ8NBT0 407 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 SCCPDHQ8NBX0 429 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 BEND2Q8NDZ0 799 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 OR10R2Q8NGX6 335 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 LILRB1Q8NHL6 650 aaPredicted RBP4.62□□□□□ -1.67
VPS41-211ENST00000466017 SETD6Q8TBK2 473 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 PHF21AQ96BD5 680 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 ZC3HAV1LQ96H79 300 aaKnown RBP4.62□□□□□ -1.67
VPS41-211ENST00000466017 ABHD1Q96SE0 405 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 GAL3ST1Q99999 423 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 C7orf50Q9BRJ6 194 aaKnown RBP4.62□□□□□ -1.67
VPS41-211ENST00000466017 TMEM59Q9BXS4 323 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 ATG5Q9H1Y0 275 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 OR51B6Q9H340 312 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 SCPEP1Q9HB40 452 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 SPACA1Q9HBV2 294 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 HES4Q9HCC6 221 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 TAS2R8Q9NYW2 309 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 CISD1Q9NZ45 108 aaKnown RBP4.62□□□□□ -1.67
VPS41-211ENST00000466017 TREM2Q9NZC2 230 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 MTCH1Q9NZJ7 389 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 RBMX2Q9Y388 322 aaKnown RBP4.62□□□□□ -1.67
VPS41-211ENST00000466017 DMRT1Q9Y5R6 373 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 ATRXP46100 2492 aa4.62□□□□□ -1.67
VPS41-211ENST00000466017 RP1L1Q8IWN7 2480 aaPredicted RBP4.61□□□□□ -1.67
VPS41-211ENST00000466017 A0A0G2JMP0 313 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 A0A0X1KG70 313 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 MARCH11A6NNE9 402 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SERPINE3A8MV23 424 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SRRM5B3KS81 715 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 H0YL77 283 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 TRAPPC2LH3BP13 241 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 H7C417 338 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SPDEFO95238 335 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 ECDO95905 644 aaPredicted RBP4.61□□□□□ -1.67
VPS41-211ENST00000466017 IGHV1-46P01743 117 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 PRB1P04280 392 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SFTPBP07988 381 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 CSF3P09919 207 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 GSTT2BP0CG30 244 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 MGMTP16455 207 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 FUT3P21217 361 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 CDK2P24941 298 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 PRSS3P35030 304 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 CBX5P45973 191 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 KCNJ3P48549 501 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 PPOXP50336 477 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 ZNF81P51508 661 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 GPM6AP51674 278 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 EFNB2P52799 333 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 IFITM3Q01628 133 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 PAX5Q02548 391 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SCN1BQ07699 218 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SRSF1Q07955 248 aaKnown RBP eCLIP4.61□□□□□ -1.67
VPS41-211ENST00000466017 DYRK1AQ13627 763 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 IL18Q14116 193 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 RSU1Q15404 277 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 BAK1Q16611 211 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SLC22A6Q4U2R8 563 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 HAGHLQ6PII5 290 aaPredicted RBP4.61□□□□□ -1.67
VPS41-211ENST00000466017 Q6ZTK2 550 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SLC25A26Q70HW3 274 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 WDR86Q86TI4 376 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 BIVMQ86UB2 503 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 DTX2Q86UW9 622 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 Q8N402 240 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 MINDY2Q8NBR6 621 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 BHLHE23Q8NDY6 225 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 TMEM104Q8NE00 496 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 OR4M2Q8NGB6 313 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 GPX8Q8TED1 209 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SMIM4Q8WVI0 70 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 RFT1Q96AA3 541 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 SPACA5Q96QH8 159 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 NRIP2Q9BQI9 281 aa4.61□□□□□ -1.67
VPS41-211ENST00000466017 THAP7Q9BT49 309 aaPredicted RBP4.61□□□□□ -1.67
VPS41-211ENST00000466017 ADAT1Q9BUB4 502 aaKnown RBP4.61□□□□□ -1.67
VPS41-211ENST00000466017 RIMS4Q9H426 269 aaPredicted RBP4.61□□□□□ -1.67
VPS41-211ENST00000466017 NCOR1P1Q9H4R4 102 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms