RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 VAX2Q9UIW0 290 aa16.8■□□□□ 0.28
CCDC88B-204ENST00000463837 IGHV5-51A0A0C4DH38 117 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 GAPDHP04406 335 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 VSIG8P0DPA2 414 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 CEACAM6P40199 344 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 POLR2GP62487 172 aaKnown RBP eCLIP16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 RGS7BPQ6MZT1 257 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 ZNF774Q6NX45 483 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 HOGA1Q86XE5 327 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 OR10A7Q8NGE5 316 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 ZNF835Q9Y2P0 537 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 TRBV5-5A0A0J9YX44 114 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 OR5B21A6NL26 309 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 SPINK4O60575 86 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 ZNF32P17041 273 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 MPLP40238 635 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 DLK1P80370 383 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 SPATA46Q5T0L3 261 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 ZNF660Q6AZW8 331 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 SLC26A10Q8NG04 563 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 ZNRF4Q8WWF5 429 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 PACRGQ96M98 296 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 NRIP2Q9BQI9 281 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 LIPT2A6NK58 231 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 DBX1A6NMT0 343 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 PCOLCE2Q9UKZ9 415 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 NGFP01138 241 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 IFI6P09912 130 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 ACAA2P42765 397 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 RPEL1Q2QD12 228 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 ADAD2Q8NCV1 583 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 ZNF596Q8TC21 504 aa16.79■□□□□ 0.28
CCDC88B-204ENST00000463837 SLC22A20A6NK97 555 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 NUFIP2Q7Z417 695 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 TBC1D26Q86UD7 250 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 WFDC8Q8IUA0 241 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 NDFIP1Q9BT67 221 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 ANGPTL4Q9BY76 406 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 RAB33BQ9H082 229 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 NAT8BQ9UHF3 227 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 TRAV34A0A0B4J273 112 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 EFNB2P52799 333 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 PKIAP61925 76 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 RHOBP62745 196 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 VAX1Q5SQQ9 334 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 OR10AC1Q8NH08 325 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 ESRP2Q9H6T0 727 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 IL11RAQ14626 422 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 RNPS1Q15287 305 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 NHLRC2Q8NBF2 726 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 IL22RA2Q969J5 263 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 TRDCB7Z8K6 153 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 ERVS71-1P61550 626 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 FAM3AP98173 230 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 TMEM211Q6ICI0 200 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 MRPL24Q96A35 216 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 PGLYRP3Q96LB9 341 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 PITPNC1Q9UKF7 332 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 RNF24Q9Y225 148 aa16.78■□□□□ 0.28
CCDC88B-204ENST00000463837 TOX3O15405 576 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 SYNGR2O43760 224 aa16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 TMIGD3P0DMS9 266 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 SULT1A2P50226 295 aa16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 NANOS3P60323 173 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 EWSR1Q01844 656 aaKnown RBP eCLIP16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 C1orf53Q5VUE5 145 aa16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 FAM109BQ6ICB4 259 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 GTF2H5Q6ZYL4 71 aa16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 PRSS50Q9UI38 385 aa16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 HRASP01112 189 aa16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 ADAT1Q9BUB4 502 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 KLK13Q9UKR3 277 aa16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 THSD7AQ9UPZ6 1657 aa16.77■□□□□ 0.28
CCDC88B-204ENST00000463837 OR5H15A6NDH6 313 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 KIAA1324LA8MWY0 1029 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 ERGP11308 486 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 SF3B5Q9BWJ5 86 aaKnown RBP16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 SLC25A22Q9H936 323 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 ZFP64Q9NPA5 681 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 H3BQ15 152 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 YIF1AO95070 293 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 MT-CO3P00414 261 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 MYF5P13349 255 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 GNG4P50150 75 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 RPS4XP62701 263 aaKnown RBP16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 TSPO2Q5TGU0 170 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 PLPPR2Q96GM1 343 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 GPX7Q96SL4 187 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 MPC1Q9Y5U8 109 aa16.77■□□□□ 0.27
CCDC88B-204ENST00000463837 TRGV10A0A0A0MS01 117 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 A0A1W2PPC1 479 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 FCN1O00602 326 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 PTTG1IPP53801 180 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 ZXDAP98168 799 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 ZAR1Q86SH2 424 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 MRGPRGQ86SM5 289 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 WDR13Q9H1Z4 485 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 KLK10O43240 276 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 CLEC1BQ9P126 229 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 LOC102723971A0A1B0GUV8 181 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms