RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 TMEM133Q9H2Q1 129 aa6.3□□□□□ -1.4
CD44-211ENST00000442151 MTCH1Q9NZJ7 389 aa6.3□□□□□ -1.4
CD44-211ENST00000442151 DPM3Q9P2X0 92 aa6.3□□□□□ -1.4
CD44-211ENST00000442151 TCF19Q9Y242 345 aa6.3□□□□□ -1.4
CD44-211ENST00000442151 IRGMA1A4Y4 181 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 A6NDX4 124 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 M0QZK8 103 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 INMTO95050 263 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 CLIC3O95833 236 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 FADS2O95864 444 aaKnown RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 VSIG10L2P0DP72 767 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 CCL3L1P16619 93 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 PRKACAP17612 351 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 GBX2P52951 348 aaPredicted RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 KRTAP10-3P60369 221 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ZNF91Q05481 1191 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 SLC34A1Q06495 639 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 PDZK1IP1Q13113 114 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 MED21Q13503 144 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 SSX2Q16385 188 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ODF4Q2M2E3 257 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 Q8N2B8 174 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 C11orf42Q8N5U0 333 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 KLHDC1Q8N7A1 406 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ZNF565Q8N9K5 539 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 CFHR4Q92496 578 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 CORO2AQ92828 525 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 FGGYQ96C11 551 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 HRASLS5Q96KN8 279 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 OPALINQ96PE5 141 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 CITED4Q96RK1 184 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 OR6C3Q9NZP0 311 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ZMAT5Q9UDW3 170 aaKnown RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 AMMECR1Q9Y4X0 333 aaPredicted RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 LOC107986453A0A1B0GWG9 222 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 A6NIN4 97 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ODF3BA8MYP8 253 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 PRR32B1ATL7 298 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 DEGS1O15121 323 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 SLC16A6O15403 523 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ZNF737O75373 536 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 TFF1P04155 84 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 PIPP12273 146 aaPredicted RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 LMO1P25800 156 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 VDAC2P45880 294 aaPredicted RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 KCNJ3P48549 501 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 MTNR1BP49286 362 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 POU3F4P49335 361 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ALDH3A2P51648 485 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 DLX6P56179 175 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ALKBH1Q13686 389 aaKnown RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 EDDM3AQ14507 147 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ZNF273Q14593 569 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 CRIP3Q6Q6R5 217 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ZNF782Q6ZMW2 699 aaPredicted RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 SLC16A12Q6ZSM3 486 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 BCDIN3DQ7Z5W3 292 aaKnown RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 CENPVQ7Z7K6 275 aaPredicted RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 OR13C3Q8NGS6 347 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 RNFT2Q96EX2 444 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 MBOAT4Q96T53 435 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 C9orf16Q9BUW7 83 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 BARHL1Q9BZE3 327 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 GPR61Q9BZJ8 451 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 NCOR1P1Q9H4R4 102 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 ZCCHC4Q9H5U6 513 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 LIN7BQ9HAP6 207 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 HMG20AQ9NP66 347 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 RAB9BQ9NP90 201 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 FAM53CQ9NYF3 392 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 OAZ3Q9UMX2 235 aa6.29□□□□□ -1.4
CD44-211ENST00000442151 EXOGQ9Y2C4 368 aaKnown RBP6.29□□□□□ -1.4
CD44-211ENST00000442151 TMEM212A6NML5 194 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 J3QLW9 94 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 MAGEB4O15481 346 aaPredicted RBP6.28□□□□□ -1.4
CD44-211ENST00000442151 KDM4BO94953 1096 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 CD2P06729 351 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 FAM106CPP0CH98 169 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 TMEM225BP0DP42 221 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 ZNF44P15621 663 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 ZNF19P17023 458 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 C21orf33P30042 268 aaPredicted RBP6.28□□□□□ -1.4
CD44-211ENST00000442151 CEBPDP49716 269 aaPredicted RBP6.28□□□□□ -1.4
CD44-211ENST00000442151 P2RX3P56373 397 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 ISL1P61371 349 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 BDH1Q02338 343 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 PRB3Q04118 309 aaPredicted RBP6.28□□□□□ -1.4
CD44-211ENST00000442151 GALEQ14376 348 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 TP53I3Q53FA7 332 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 HEPN1Q6WQI6 88 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 SYS1Q8N2H4 156 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 ABHD12Q8N2K0 398 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 S100A13Q99584 98 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 PAK1IP1Q9NWT1 392 aaPredicted RBP6.28□□□□□ -1.4
CD44-211ENST00000442151 GSTK1Q9Y2Q3 226 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 RPL36Q9Y3U8 105 aaKnown RBP6.28□□□□□ -1.4
CD44-211ENST00000442151 GMPPBQ9Y5P6 360 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 TET2Q6N021 2002 aaPredicted RBP6.28□□□□□ -1.4
CD44-211ENST00000442151 MGAM2Q2M2H8 2515 aa6.28□□□□□ -1.4
CD44-211ENST00000442151 IGHV2-26A0A0B4J1V2 119 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms