RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 TUBA4BQ9H853 241 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 PLSCR2Q9NRY7 297 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 ST3GAL6Q9Y274 331 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 CABIN1Q9Y6J0 2220 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 ASCC3Q8N3C0 2202 aaKnown RBP9.79□□□□□ -0.84
USP4-205ENST00000431357 ZNF816-ZNF321PA0A0X1KG74 233 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 hCG_38984A0A1B0GV85 526 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 ZNF716A6NP11 495 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 C9JQL5 133 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 G3V3Y1 287 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 XRCC2O43543 280 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 IFNA10P01566 189 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 P04436 131 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 CAMLGP49069 296 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 HGFACQ04756 655 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 GUK1Q16774 197 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 OR2B11Q5JQS5 317 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 FBXL14Q8N1E6 418 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 FOXB1Q99853 325 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 OR2H1Q9GZK4 316 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 FAM86C1Q9NVL1 165 aa9.79□□□□□ -0.84
USP4-205ENST00000431357 IGKV1-12A0A0C4DH73 117 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A10PA6NDY2 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A18PA6NE21 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A16PA6NEW6 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 C5orf52A6NGY3 159 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A20PA6NIJ5 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A8PA6NJQ4 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A7PA6NKC0 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A22PA8MWA6 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A12PA8MX19 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A5PA8MXJ8 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A23PA8MXZ1 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 IGKV1D-12P01611 117 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A15PP0C7V4 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A13PP0C7W8 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A14PP0C7W9 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FAM90A24PP0C7X0 464 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FUT3P21217 361 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 FOLR3P41439 243 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 PSG4Q00888 419 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 GNMTQ14749 295 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 SRSF7Q16629 238 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP4-205ENST00000431357 RSPO4Q2I0M5 234 aaPredicted RBP9.78□□□□□ -0.84
USP4-205ENST00000431357 PIGYQ3MUY2 71 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 MIDNQ504T8 468 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 PHLDA2Q53GA4 152 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 LFNGQ8NES3 379 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 AKR7LQ8NHP1 331 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 SECTM1Q8WVN6 248 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 MARS2Q96GW9 593 aaKnown RBP9.78□□□□□ -0.84
USP4-205ENST00000431357 PBDC1Q9BVG4 233 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 C19orf12Q9NSK7 152 aa9.78□□□□□ -0.84
USP4-205ENST00000431357 CCDC163A0A0D9SF12 145 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 TMEM238LA0A1B0GVL6 79 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 C1orf196B1AJZ1 125 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 PHF1O43189 567 aaPredicted RBP9.77□□□□□ -0.84
USP4-205ENST00000431357 CDS2O95674 445 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 ID4P47928 161 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 PPT1P50897 306 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 DUSP3P51452 185 aaPredicted RBP9.77□□□□□ -0.84
USP4-205ENST00000431357 RBM11P57052 281 aaKnown RBP9.77□□□□□ -0.84
USP4-205ENST00000431357 COTL1Q14019 142 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 PLCXD3Q63HM9 321 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 ABLIM2Q6H8Q1 611 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 Q6ZS49 121 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 GGNQ86UU5 652 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 OR4D5Q8NGN0 318 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 OR2V1Q8NHB1 315 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 OR14L1PQ8NHC6 308 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 SPIN2AQ99865 258 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 SSX3Q99909 188 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 SPIN2BQ9BPZ2 258 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 SMDT1Q9H4I9 107 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 WFDC1Q9HC57 220 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 METTL1Q9UBP6 276 aaKnown RBP9.77□□□□□ -0.84
USP4-205ENST00000431357 PILRBQ9UKJ0 227 aa9.77□□□□□ -0.84
USP4-205ENST00000431357 MRPS18CQ9Y3D5 142 aaKnown RBP9.77□□□□□ -0.84
USP4-205ENST00000431357 A0A1B0GW64 132 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 DIRAS3O95661 229 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 MT-ND4LP03901 98 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 B4GALT1P15291 398 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 KCNJ3P48549 501 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 ZNF616Q08AN1 781 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 NRN1LQ496H8 165 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 DNLZQ5SXM8 178 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 YRDCQ86U90 279 aaKnown RBP9.77□□□□□ -0.85
USP4-205ENST00000431357 Q8NFD4 153 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 OR5L1Q8NGL2 311 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 PIGCQ92535 297 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 SPSB4Q96A44 273 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 ABHD14BQ96IU4 210 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 ZNF442Q9H7R0 627 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 RPS10P5Q9NQ39 176 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 PARPBPQ9NWS1 579 aa9.77□□□□□ -0.85
USP4-205ENST00000431357 RCL1Q9Y2P8 373 aaKnown RBP9.77□□□□□ -0.85
USP4-205ENST00000431357 EML6Q6ZMW3 1958 aa9.76□□□□□ -0.85
USP4-205ENST00000431357 NTN3O00634 580 aaPredicted RBP9.76□□□□□ -0.85
USP4-205ENST00000431357 MPPED1O15442 326 aa9.76□□□□□ -0.85
USP4-205ENST00000431357 CXCL13O43927 109 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms