RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 NDUFB6O95139 128 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 ORM1P02763 201 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 DYNLT3P51808 116 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 RNFT1Q5M7Z0 435 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 LIAT1Q6ZQX7 453 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 NTNG2Q96CW9 530 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 AKIP1Q9NQ31 210 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 OR2T8A6NH00 312 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 FDX2Q6P4F2 183 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 OR10AC1Q8NH08 325 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 WSB1Q9Y6I7 421 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 OR5B21A6NL26 309 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 PNPP00491 289 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 PSMB2P49721 201 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 TCL1AP56279 114 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 DHRS2Q13268 280 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 ST3GAL2Q16842 350 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 FAM78BQ5VT40 261 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 OR2Y1Q8NGV0 311 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 OR1L1Q8NH94 360 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 WDR13Q9H1Z4 485 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 SEMA7AO75326 666 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 FAM87AP0C7U9 286 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 SLC35E4Q6ICL7 350 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 VN1R4Q7Z5H5 301 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 ABHD3Q8WU67 409 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 ZMAT5Q9UDW3 170 aaKnown RBP13.6□□□□□ -0.23
PTPRF-206ENST00000429895 ATP5SQ99766 215 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 CYSLTR2Q9NS75 346 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 TMEFF2Q9UIK5 374 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-206ENST00000429895 VSIG4Q9Y279 399 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 NRAPQ86VF7 1730 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 KCNE1BA0A087WTH5 132 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 OOEPA6NGQ2 149 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 ERVS71-1P61550 626 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 C1QL3Q5VWW1 255 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 OR4C5Q8NGB2 326 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 PTP4A1Q93096 173 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 SRD5A3Q9H8P0 318 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 SLC17A5Q9NRA2 495 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 RNF7Q9UBF6 113 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 TRBV23-1A0A0A0MS06 115 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 PRSS1P07477 247 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 RAC3P60763 192 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 GLRX2Q9NS18 164 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 MMP24Q9Y5R2 645 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 MPC1Q9Y5U8 109 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 PLPP2O43688 288 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 POLR2GP62487 172 aaKnown RBP eCLIP13.59□□□□□ -0.23
PTPRF-206ENST00000429895 TAF1P21675 1872 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 GSTZ1O43708 216 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-206ENST00000429895 C17orf47Q8NEP4 570 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 NTMQ9P121 344 aa13.59□□□□□ -0.23
PTPRF-206ENST00000429895 EXOGQ9Y2C4 368 aaKnown RBP13.59□□□□□ -0.23
PTPRF-206ENST00000429895 C9orf172C9J069 976 aa13.58□□□□□ -0.23
PTPRF-206ENST00000429895 GEMIN2O14893 280 aaKnown RBP13.58□□□□□ -0.23
PTPRF-206ENST00000429895 CCL3P10147 92 aa13.58□□□□□ -0.23
PTPRF-206ENST00000429895 PMELP40967 661 aa13.58□□□□□ -0.23
PTPRF-206ENST00000429895 OR6X1Q8NH79 312 aa13.58□□□□□ -0.23
PTPRF-206ENST00000429895 INSIG2Q9Y5U4 225 aa13.58□□□□□ -0.23
PTPRF-206ENST00000429895 TRAV39A0A0B4J263 110 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 IGHV5-10-1A0A0J9YXX1 117 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 RHBDL1O75783 438 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 AREGP15514 252 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 RANP62826 216 aaKnown RBP13.58□□□□□ -0.24
PTPRF-206ENST00000429895 ZNF441Q8N8Z8 693 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 SSMEM1Q8WWF3 244 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 SLC2A9Q9NRM0 540 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 GP1BAP07359 652 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 TEX261Q6UWH6 196 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 LINC00299Q6ZSB3 139 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 OR2C3Q8N628 320 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 ASB13Q8WXK3 278 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 MMP26Q9NRE1 261 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 U3KQ87 197 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 TRDCB7Z8K6 153 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 REG1BP48304 166 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 ZNF547Q8IVP9 402 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 EAF1Q96JC9 268 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-206ENST00000429895 A0A1W2PPE3 182 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 C12orf57Q99622 126 aa13.58□□□□□ -0.24
PTPRF-206ENST00000429895 IGLV3-16A0A075B6K0 115 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 HOXC4P09017 264 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-206ENST00000429895 SLC6A1P30531 599 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 CD226Q15762 336 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 ZNF665Q9H7R5 613 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 CCKARP32238 428 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 ZNF154Q13106 437 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 FOXB2Q5VYV0 432 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 DDX60LQ5H9U9 1706 aaKnown RBP13.57□□□□□ -0.24
PTPRF-206ENST00000429895 CDC20Q12834 499 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 OR4P4Q8NGL7 312 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 C19orf43Q9BQ61 176 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 CDC42EP2O14613 210 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 ACAA2P42765 397 aaKnown RBP13.57□□□□□ -0.24
PTPRF-206ENST00000429895 CRYBB2P43320 205 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 PSG5Q15238 335 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 SHROOM3Q8TF72 1996 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 HRKO00198 91 aa13.57□□□□□ -0.24
PTPRF-206ENST00000429895 ARG1P05089 322 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms