RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ABCG5Q9H222 651 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 SEBOXQ9HB31 216 aaPredicted RBP8.48□□□□□ -1.05
CD44-207ENST00000425428 A0A1W2PPH5 198 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 SIRPB1O00241 398 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 GEMIN2O14893 280 aaKnown RBP8.47□□□□□ -1.05
CD44-207ENST00000425428 PDCD6O75340 191 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 RP2O75695 350 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 EGR1P18146 543 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 DUSP1P28562 367 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 NPY4RP50391 375 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 UNC119Q13432 240 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 ARFRP1Q13795 201 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 Q5PR19 223 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 LINC00299Q6ZSB3 139 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 RNF144BQ7Z419 303 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 TMEM104Q8NE00 496 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 TMEM185AQ8NFB2 350 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 S100ZQ8WXG8 99 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 NEIL1Q96FI4 390 aaPredicted RBP8.47□□□□□ -1.05
CD44-207ENST00000425428 SNX22Q96L94 193 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 NUDT16L1Q9BRJ7 211 aaKnown RBP8.47□□□□□ -1.05
CD44-207ENST00000425428 FAM234AQ9H0X4 552 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 RAB9BQ9NP90 201 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 EXTL2Q9UBQ6 330 aa8.47□□□□□ -1.05
CD44-207ENST00000425428 MRPS7Q9Y2R9 242 aaKnown RBP8.47□□□□□ -1.05
CD44-207ENST00000425428 SERPINE3A8MV23 424 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 GPR37O15354 613 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 OR2H2O95918 312 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 IGHV2-70P01814 119 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 CD3GP09693 182 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 NDUFB7P17568 137 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 NR4A2P43354 598 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 COL10A1Q03692 680 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 IL18Q14116 193 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 ZMYND11Q15326 602 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 ESCO2Q56NI9 601 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 ATPAF1Q5TC12 328 aaPredicted RBP8.46□□□□□ -1.05
CD44-207ENST00000425428 STUMQ69YW2 141 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 C19orf18Q8NEA5 215 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 OR5H6Q8NGV6 325 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 NXF2Q9GZY0 626 aaKnown RBP8.46□□□□□ -1.05
CD44-207ENST00000425428 LPAR5Q9H1C0 372 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 RIMS4Q9H426 269 aaPredicted RBP8.46□□□□□ -1.05
CD44-207ENST00000425428 IFT22Q9H7X7 185 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 TMEM165Q9HC07 324 aa8.46□□□□□ -1.05
CD44-207ENST00000425428 CHMP1AQ9HD42 196 aaPredicted RBP8.46□□□□□ -1.05
CD44-207ENST00000425428 DCHS2Q6V1P9 2916 aa8.46□□□□□ -1.06
CD44-207ENST00000425428 TRAV18A0A075B6X5 111 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 A0A1W2PP11 408 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 FABP12A6NFH5 140 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 F8VVB4 439 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 F8VWA3 439 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 LDLRAD4O15165 306 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 XRCC3O43542 346 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 CA11O75493 328 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 TPPPO94811 219 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 GSTP1P09211 210 aaKnown RBP8.45□□□□□ -1.06
CD44-207ENST00000425428 GNG2P59768 71 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 GNB2P62879 340 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 QRFPP83859 136 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 GRK1Q15835 563 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 FAM201AQ5SY85 155 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 CD276Q5ZPR3 534 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 CRIP3Q6Q6R5 217 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 METAP1DQ6UB28 335 aaPredicted RBP8.45□□□□□ -1.06
CD44-207ENST00000425428 FAM131AQ6UXB0 335 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 CMTM4Q8IZR5 234 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 ANGPTL6Q8NI99 470 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 C10orf105Q8TEF2 133 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 C1orf147Q96MC9 270 aaPredicted RBP8.45□□□□□ -1.06
CD44-207ENST00000425428 CCL13Q99616 98 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 FOXC2Q99958 501 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 TMEM246Q9BRR3 403 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 DPCDQ9BVM2 203 aaPredicted RBP8.45□□□□□ -1.06
CD44-207ENST00000425428 BPESC1Q9GZL8 116 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 KCNK15Q9H427 330 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 NARFLQ9H6Q4 476 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 SLC25A10Q9UBX3 287 aaPredicted RBP8.45□□□□□ -1.06
CD44-207ENST00000425428 LPAR3Q9UBY5 353 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 CLN8Q9UBY8 286 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 HSF4Q9ULV5 492 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 HSPB6O14558 160 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 CTDSP2O14595 271 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 MGST3O14880 152 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 SIGLEC5O15389 551 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 ELK1P19419 428 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 CDK2P24941 298 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 INPP1P49441 399 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 MRPS10P82664 201 aaKnown RBP8.45□□□□□ -1.06
CD44-207ENST00000425428 PNLIPRP3Q17RR3 467 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 C11orf91Q3C1V1 193 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 ZNF788Q6ZQV5 615 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 TGIF2LYQ8IUE0 185 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 LAX1Q8IWV1 398 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 FAM89BQ8N5H3 189 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 SUMF2Q8NBJ7 301 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 ST8SIA4Q92187 359 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 SDSLQ96GA7 329 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 DCAF16Q9NXF7 216 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 ETAA1Q9NY74 926 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms