RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 PDPNQ86YL7 162 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 ABHD3Q8WU67 409 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 C8orf44Q96CB5 159 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 ABHD14AQ9BUJ0 271 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 TRGV10A0A0A0MS01 117 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 SYNGR2O43760 224 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 SMPD2O60906 423 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 SURF2Q15527 256 aaPredicted RBP10.53□□□□□ -0.72
SYNPO-202ENST00000394243 DMRTA1Q5VZB9 504 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 CXorf67Q86X51 503 aaPredicted RBP10.53□□□□□ -0.72
SYNPO-202ENST00000394243 WDFY1Q8IWB7 410 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 WDR13Q9H1Z4 485 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 UQCR10Q9UDW1 63 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 UBR2Q8IWV8 1755 aa10.53□□□□□ -0.72
SYNPO-202ENST00000394243 OR2W5A6NFC9 320 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 RIGQ13278 110 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 ZNF683Q8IZ20 524 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 MUC15Q8N387 334 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 MORN4Q8NDC4 146 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 ZG16BQ96DA0 208 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 ALKBH3Q96Q83 286 aaPredicted RBP10.52□□□□□ -0.72
SYNPO-202ENST00000394243 H0Y8X5 98 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 ISLRO14498 428 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 FAM157CP0CG43 387 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 SCGB1A1P11684 91 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 PPP2CAP67775 309 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 ZNF362Q5T0B9 420 aaPredicted RBP10.52□□□□□ -0.72
SYNPO-202ENST00000394243 MOB3BQ86TA1 216 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 DEFB127Q9H1M4 99 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 ZFP30Q9Y2G7 519 aa10.52□□□□□ -0.72
SYNPO-202ENST00000394243 TRBV5-4A0A0C4DH59 114 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 SEC11BP0C7V7 166 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 GCSHP23434 173 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 DPTQ07507 201 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 KIAA0040Q15053 153 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 CD226Q15762 336 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 SGMS2Q8NHU3 365 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 FER1L6-AS2Q96M78 137 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 TWSG1Q9GZX9 223 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 PRSS23O95084 383 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 MRPL30Q8TCC3 161 aaKnown RBP10.52□□□□□ -0.73
SYNPO-202ENST00000394243 RGPD2P0DJD1 1756 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 SOCS1O15524 211 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF137PP52743 207 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 RPS23P62266 143 aaKnown RBP10.52□□□□□ -0.73
SYNPO-202ENST00000394243 KHDC3LQ587J8 217 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF770Q6IQ21 691 aaPredicted RBP10.52□□□□□ -0.73
SYNPO-202ENST00000394243 OR1B1Q8NGR6 318 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 RFESDQ8TAC1 157 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 PIPOXQ9P0Z9 390 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 SHISA8B8ZZ34 492 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 CDC42EP2O14613 210 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 CFDP00746 253 aaPredicted RBP10.52□□□□□ -0.73
SYNPO-202ENST00000394243 C12orf54Q6X4T0 127 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 HDGFL3Q9Y3E1 203 aa10.52□□□□□ -0.73
SYNPO-202ENST00000394243 LOC107984156A0A0G2JMH3 177 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 C7orf66A4D0T2 115 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 M0R1B8 84 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 OGG1O15527 345 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 HOXA6P31267 233 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 CXCL12P48061 93 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 CEACAM16Q2WEN9 425 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF260Q3ZCT1 412 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 Q5PR19 223 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 ARL17AQ8IVW1 177 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 CPEB3Q8NE35 698 aaKnown RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 MARCH5Q9NX47 278 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 THAP10Q9P2Z0 257 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 HCFC2Q9Y5Z7 792 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 H0YIG0 161 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 PDCD6O75340 191 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 CYB5R3P00387 301 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 ATP6V0CP27449 155 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 CCL11P51671 97 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 DLX1P56177 255 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 TAS2R60P59551 318 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 VMA21Q3ZAQ7 101 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 RTL10Q7L3V2 364 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 TSPAN32Q96QS1 320 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 ATP23Q9Y6H3 246 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 RP1P56715 2156 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 LOC389332A0A1B0GUA5 103 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 ANKRD34CP0C6C1 535 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 COL8A1P27658 744 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF660Q6AZW8 331 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 OR4B1Q8NGF8 309 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 SSMEM1Q8WWF3 244 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 FLYWCH2Q96CP2 140 aaKnown RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 UBE2ZQ9H832 354 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 NUP98P52948 1817 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 GNG3P63215 75 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 DCAF12L2Q5VW00 463 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 RGS7BPQ6MZT1 257 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 LYZL2Q7Z4W2 148 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 MYOZ3Q8TDC0 251 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 APOBEC3DQ96AK3 386 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 FOXJ2Q9P0K8 574 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 MRM2Q9UI43 246 aaKnown RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 TGIF2-C20orf24A0A0A6YYL0 155 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms