RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FAM90A16PA6NEW6 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A20PA6NIJ5 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A8PA6NJQ4 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A7PA6NKC0 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FOXI3A8MTJ6 420 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A22PA8MWA6 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A12PA8MX19 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A5PA8MXJ8 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A23PA8MXZ1 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 HLA-AP01891 365 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A15PP0C7V4 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A13PP0C7W8 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A14PP0C7W9 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A24PP0C7X0 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 SLC25A4P12235 298 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 BLVRBP30043 206 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 ERVS71-1P61550 626 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 IL24Q13007 206 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 NKPD1Q17RQ9 610 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FBXL19-AS1Q494R0 122 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 ELP2Q6IA86 826 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 TERB2Q8NHR7 220 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 NICN1Q9BSH3 213 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 MED9Q9NWA0 146 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 A0A0B4J2A0 478 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 A0A1W2PP11 408 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 C9orf170A2RU37 121 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 J3QT63 122 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 SOCS1O15524 211 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 SIX6O95475 246 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 TMEM50BP56557 158 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 ARFRP1Q13795 201 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 NHLRC3Q5JS37 347 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 PLAC9Q5JTB6 97 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 LY6G6FQ5SQ64 297 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 DCAF12L2Q5VW00 463 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 Q8IYB0 196 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 GVQW1Q8N7I0 195 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 Q8NFD4 153 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 OR13G1Q8NGZ3 307 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FBXW5Q969U6 566 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 CITED4Q96RK1 184 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 COMMD9Q9P000 198 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 SHPKQ9UHJ6 478 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 HSF4Q9ULV5 492 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 TPRP12270 2363 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 FXYD6-FXYD2A0A087WZ82 144 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 VSTM5A8MXK1 200 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 ARPC5O15511 151 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 DUS4LO95620 317 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 CD40P25942 277 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 CCKARP32238 428 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 MPV17P39210 176 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 ECI1P42126 302 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 LINC00596Q86U02 117 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 CALHM1Q8IU99 346 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 TMEM185AQ8NFB2 350 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 FXYD6Q9H0Q3 95 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 CXXC4Q9H2H0 198 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 LAMA5O15230 3695 aa15.53■□□□□ 0.08
CCDC88C-203ENST00000389856 SHANK1Q9Y566 2161 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 ACACBO00763 2458 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 GABRR1P24046 479 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 FABP6P51161 128 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 P2RX3P56373 397 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 IL13RA1P78552 427 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 ZNF345Q14585 488 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 SURF2Q15527 256 aaPredicted RBP15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 OR52W1Q6IF63 320 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 HAGHLQ6PII5 290 aaPredicted RBP15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 SLC51BQ86UW2 128 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 WFDC8Q8IUA0 241 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 OR5H2Q8NGV7 314 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 SCARB1Q8WTV0 552 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 ST8SIA4Q92187 359 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 RNASE6Q93091 150 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 ARHGAP5-AS1Q96IT6 56 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 MFFQ9GZY8 342 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 OR51I2Q9H344 312 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 PLEKHJ1Q9NW61 149 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 ST3GAL6Q9Y274 331 aa15.52■□□□□ 0.08
CCDC88C-203ENST00000389856 OR2F2O95006 317 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 CSN2P05814 226 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 ZNF250P15622 560 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 FPR2P25090 351 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 PMELP40967 661 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 AP2S1P53680 142 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 RBM11P57052 281 aaKnown RBP15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 KLF3P57682 345 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 FGF12P61328 243 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 CYCSP99999 105 aaKnown RBP15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 OR2F1Q13607 317 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 MICBQ29980 383 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 TMEM128Q5BJH2 165 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 FBXL14Q8N1E6 418 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 NUP37Q8NFH4 326 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 MRGPRFQ96AM1 343 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 ARL6Q9H0F7 186 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 CRIM1Q9NZV1 1036 aa15.51■□□□□ 0.07
CCDC88C-203ENST00000389856 NDRG3Q9UGV2 375 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms