RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 FAM221AA4D161 298 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 MCRIP1C9JLW8 97 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 SFT2D2O95562 160 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 GLAP06280 429 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 GLI4P10075 376 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 PGAM2P15259 253 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 OR8G1Q15617 311 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 C1QTNF12Q5T7M4 302 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 SLC22A25Q6T423 547 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 CISD2Q8N5K1 135 aaKnown RBP21.48■■□□□ 1.03
SHOX2-201ENST00000389589 OR8G5Q8NG78 346 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 CLEC4MQ9H2X3 399 aaPredicted RBP21.48■■□□□ 1.03
SHOX2-201ENST00000389589 CHMP1AQ9HD42 196 aaPredicted RBP21.48■■□□□ 1.03
SHOX2-201ENST00000389589 TMEM100Q9NV29 134 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 A0A0B4J2A0 478 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 HMSDA8MTL9 139 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 KITLGP21583 273 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 ZNF81P51508 661 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 TMPRSS3P57727 454 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 BAMBIQ13145 260 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 ALKBH6Q3KRA9 238 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 C3orf36Q3SXR2 165 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 ZNF718Q3SXZ3 478 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 ZNF767PQ75MW2 155 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 IFT22Q9H7X7 185 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 IL36RNQ9UBH0 155 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 SHPKQ9UHJ6 478 aa21.48■■□□□ 1.03
SHOX2-201ENST00000389589 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP21.47■■□□□ 1.03
SHOX2-201ENST00000389589 NFYAP23511 347 aaPredicted RBP21.47■■□□□ 1.03
SHOX2-201ENST00000389589 UCNP55089 124 aa21.47■■□□□ 1.03
SHOX2-201ENST00000389589 C3P1Q6ZMU1 363 aa21.47■■□□□ 1.03
SHOX2-201ENST00000389589 WDR86Q86TI4 376 aa21.47■■□□□ 1.03
SHOX2-201ENST00000389589 SCCPDHQ8NBX0 429 aa21.47■■□□□ 1.03
SHOX2-201ENST00000389589 GTF3AQ92664 365 aaKnown RBP21.47■■□□□ 1.03
SHOX2-201ENST00000389589 ZNF488Q96MN9 340 aa21.47■■□□□ 1.03
SHOX2-201ENST00000389589 CD8AP01732 235 aa21.46■■□□□ 1.03
SHOX2-201ENST00000389589 FGL1Q08830 312 aa21.46■■□□□ 1.03
SHOX2-201ENST00000389589 RIMS4Q9H426 269 aaPredicted RBP21.46■■□□□ 1.03
SHOX2-201ENST00000389589 SPENQ96T58 3664 aaKnown RBP21.46■■□□□ 1.03
SHOX2-201ENST00000389589 DBX1A6NMT0 343 aa21.46■■□□□ 1.03
SHOX2-201ENST00000389589 TSC22D2O75157 780 aa21.46■■□□□ 1.03
SHOX2-201ENST00000389589 RHBDL1O75783 438 aa21.46■■□□□ 1.03
SHOX2-201ENST00000389589 CTSDP07339 412 aaPredicted RBP21.46■■□□□ 1.03
SHOX2-201ENST00000389589 GLRA1P23415 457 aa21.46■■□□□ 1.03
SHOX2-201ENST00000389589 GCH1P30793 250 aa21.46■■□□□ 1.03
SHOX2-201ENST00000389589 MBNL2Q5VZF2 373 aaKnown RBP21.46■■□□□ 1.03
SHOX2-201ENST00000389589 S100PBPQ96BU1 408 aa21.46■■□□□ 1.03
SHOX2-201ENST00000389589 NAPSAO96009 420 aa21.45■■□□□ 1.02
SHOX2-201ENST00000389589 PI3P19957 117 aa21.45■■□□□ 1.02
SHOX2-201ENST00000389589 CLEC18BQ6UXF7 455 aa21.45■■□□□ 1.02
SHOX2-201ENST00000389589 DOLPP1Q86YN1 238 aa21.45■■□□□ 1.02
SHOX2-201ENST00000389589 MUCL1Q96DR8 90 aa21.45■■□□□ 1.02
SHOX2-201ENST00000389589 PDCD10Q9BUL8 212 aa21.45■■□□□ 1.02
SHOX2-201ENST00000389589 PIGMQ9H3S5 423 aa21.45■■□□□ 1.02
SHOX2-201ENST00000389589 PRR14LQ5THK1 2151 aa21.45■■□□□ 1.02
SHOX2-201ENST00000389589 SEC61A1P61619 476 aaKnown RBP21.44■■□□□ 1.02
SHOX2-201ENST00000389589 NAAAQ02083 359 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 RBM39Q14498 530 aaKnown RBP21.44■■□□□ 1.02
SHOX2-201ENST00000389589 KCTD9Q7L273 389 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 COQ8AQ8NI60 647 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 NEK7Q8TDX7 302 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 SLC23A1Q9UHI7 598 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 RFPL4AA6NLU0 287 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 RFPL4AL1F8VTS6 287 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 TIMM8AO60220 97 aaPredicted RBP21.44■■□□□ 1.02
SHOX2-201ENST00000389589 ACAA1P09110 424 aaPredicted RBP21.44■■□□□ 1.02
SHOX2-201ENST00000389589 GLP1RP43220 463 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 ZNF154Q13106 437 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 SUMF2Q8NBJ7 301 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 WDR13Q9H1Z4 485 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 Q9N2K0 584 aa21.44■■□□□ 1.02
SHOX2-201ENST00000389589 DUSP1P28562 367 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 ERVK11-1P61568 191 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 SUPT4H1P63272 117 aaKnown RBP21.43■■□□□ 1.02
SHOX2-201ENST00000389589 GFRALQ6UXV0 394 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 Q6ZPA2 131 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 SPERTQ8NA61 448 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 ELMOD3Q96FG2 381 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 CEP295Q9C0D2 2601 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 ZGRF1Q86YA3 2104 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 LAMA5O15230 3695 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 L7N2F9 121 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 PGA5P0DJD9 388 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 SSTR2P30874 369 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 CXXC4Q9H2H0 198 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 COMMD9Q9P000 198 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 TINAGQ9UJW2 476 aa21.43■■□□□ 1.02
SHOX2-201ENST00000389589 A8MXE2 369 aa21.42■■□□□ 1.02
SHOX2-201ENST00000389589 CCSO14618 274 aa21.42■■□□□ 1.02
SHOX2-201ENST00000389589 SORDQ00796 357 aa21.42■■□□□ 1.02
SHOX2-201ENST00000389589 NRIP2Q9BQI9 281 aa21.42■■□□□ 1.02
SHOX2-201ENST00000389589 LIME1Q9H400 295 aa21.42■■□□□ 1.02
SHOX2-201ENST00000389589 HEXA-AS1Q9H8Q6 139 aa21.42■■□□□ 1.02
SHOX2-201ENST00000389589 DCHS1Q96JQ0 3298 aa21.42■■□□□ 1.02
SHOX2-201ENST00000389589 BOD1L1Q8NFC6 3051 aa21.42■■□□□ 1.02
SHOX2-201ENST00000389589 FXYD6-FXYD2A0A087WZ82 144 aa21.41■■□□□ 1.02
SHOX2-201ENST00000389589 H0YL77 283 aa21.41■■□□□ 1.02
SHOX2-201ENST00000389589 ZNF728P0DKX0 622 aa21.41■■□□□ 1.02
SHOX2-201ENST00000389589 RPS2P15880 293 aaKnown RBP21.41■■□□□ 1.02
SHOX2-201ENST00000389589 FCGR2CP31995 323 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms